View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16754_low_30 (Length: 364)
Name: NF16754_low_30
Description: NF16754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16754_low_30 |
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| [»] scaffold0188 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 20 - 346
Target Start/End: Original strand, 50964799 - 50965125
Alignment:
| Q |
20 |
ccttgcttgttttggaaaaatgtggttggcttggttcatgataatataaaaaatctaatagtaagctaattctagnnnnnnnnnnttctttggtgacaac |
119 |
Q |
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| T |
50964799 |
ccttgcttgttttggaaaaatgtggttggcttggttcatgataatataaaaaatctaatagtaagctaattcaagaaaaaaaaaattctttggtgacaac |
50964898 |
T |
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| Q |
120 |
atatggcttatatatagtgtggttagtaaatcaatgtgtgaaagggaaacatgagatgtggaatcatcagctgggtgccaaaatctgttaaaaaaccaat |
219 |
Q |
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| T |
50964899 |
gtatggcttatatatagtgtggttagtaaatcaatgtgttaaagggaaacatgagatgtggaatcatcaactgggtgccaaaatctgttaaaaaaccaat |
50964998 |
T |
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| Q |
220 |
tggaatcagcctcatcagaataaccattttgatttctgtgatagttatagtgagcatgtgttctgttctttatgtcgaaaatggcatgtccaaagctagc |
319 |
Q |
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| T |
50964999 |
tggaatcaacctcatcagaataaccattttgatttctgtgatagttatagtgagcatgtgttctgttctttatgtcgaaaatggcatgtccaaagctagc |
50965098 |
T |
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| Q |
320 |
ctctctgaatgctaatgtactctgcct |
346 |
Q |
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| T |
50965099 |
ctctctgaatgctaatgtactctgcct |
50965125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 144 - 332
Target Start/End: Original strand, 50980374 - 50980562
Alignment:
| Q |
144 |
agtaaatcaatgtgtgaaagggaaacatgagatgtggaatcatcagctgggtgccaaaatctgttaaaaaaccaattggaatcagcctcatcagaataac |
243 |
Q |
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| T |
50980374 |
agtaaatcaatgtatcaatggaaaacatgagcggtggaatcatcaactggatgccaaaatctgttgaaaaaccaatgggaatcagcctcaaccgaataac |
50980473 |
T |
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| Q |
244 |
cattttgatttctgtgatagttatagtgagcatgtgttctgttctttatgtcgaaaatggcatgtccaaagctagcctctctgaatgct |
332 |
Q |
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| T |
50980474 |
catcttgatttctgtgccagctatagtgagcatgtgttctgttctttatgtcgaaaatggcatgtccaaagctagcctctctgaatgct |
50980562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 149 - 332
Target Start/End: Complemental strand, 13641467 - 13641284
Alignment:
| Q |
149 |
atcaatgtgtgaaagggaaacatgagatgtggaatcatcagctgggtgccaaaatctgttaaaaaaccaattggaatcagcctcatcagaataaccattt |
248 |
Q |
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| T |
13641467 |
atcaacgtgttaatgggaaacatgagttgtggaatcatcaactgggtgccaaaatctgttgaagaaccaatgagaatcagcctcaacagagtaaccatct |
13641368 |
T |
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| Q |
249 |
tgatttctgtgatagttatagtgagcatgtgttctgttctttatgtcgaaaatggcatgtccaaagctagcctctctgaatgct |
332 |
Q |
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| T |
13641367 |
tgattcctatgccagctgtagtgagcatgtgttctgttctttatgtcaaaaatggcatgtccaaagctggcctctctgtatgct |
13641284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0188 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0188
Description:
Target: scaffold0188; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 163 - 331
Target Start/End: Complemental strand, 11832 - 11664
Alignment:
| Q |
163 |
gggaaacatgagatgtggaatcatcagctgggtgccaaaatctgttaaaaaaccaattggaatcagcctcatcagaataaccattttgatttctgtgata |
262 |
Q |
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| T |
11832 |
gggaaccatgaggtttggaatcatcaaccgggttccaaaatctgttgaaaaaccaaagggaatcactcttaacagcatcaccatcttgatttctatgcca |
11733 |
T |
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| Q |
263 |
gttatagtgagcatgtgttctgttctttatgtcgaaaatggcatgtccaaagctagcctctctgaatgc |
331 |
Q |
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| T |
11732 |
gctatagtaagcatgtgtcctattctttatgtcaaaaattgcatgtccaaagctggcttctctaaatgc |
11664 |
T |
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