View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16754_low_31 (Length: 361)
Name: NF16754_low_31
Description: NF16754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16754_low_31 |
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| [»] scaffold0153 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 16 - 347
Target Start/End: Complemental strand, 32618263 - 32617934
Alignment:
| Q |
16 |
ctttttacctgttatttatttactatgaattttgtttatggcaagggagtttaatttgtttgtgaatgaagatgcctcaaaattttgatgttagtt-agt |
114 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
32618263 |
ctttttacctgttatttatttactatgagttttgtttatggcaggggagtttaatttgtttgtgaatgaagatgcctcaaaattttgatgttagtttagt |
32618164 |
T |
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| Q |
115 |
tttataatacaatatcgtacgcttcttttttcccttttgttttgattaaaagttctcttttccttccttctaagatcgtatactctaacacccttatatc |
214 |
Q |
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||||||||| |||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32618163 |
tttataatataatatcgtacactt---ttttcgcttttgttttgattaaaagttctcttttccttccttctaagatcgtatactctaacaccctcatatc |
32618067 |
T |
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| Q |
215 |
caaccagatatgcatcttcaaagttaatttgcattctcttttgaattttaagatgattatatttagatcacaaatagacctcaccttccattgatgctat |
314 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32618066 |
caaccagatatgaatcttcaaagttaatttgcattctcttttgaattttaagatgattatatttagatcacaaatagacctcaccttccattgatgctat |
32617967 |
T |
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| Q |
315 |
gatatttaacttttactctataatttgaacacc |
347 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
32617966 |
gatatttaacttttactctataatttgaacacc |
32617934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 16 - 351
Target Start/End: Original strand, 14604662 - 14604984
Alignment:
| Q |
16 |
ctttttacctgttatttatttactatgaattttgtttatggcaagggagtttaatttgtttgtgaatgaagatgcctcaaaattttgatgttagttagtt |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| | ||| ||||| |
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| T |
14604662 |
ctttttacctgttatttatttactatgaattttgtttatggtatgggagtttaatttgtttgtgaatgaagatgcctta----------gtt---tagtt |
14604748 |
T |
|
| Q |
116 |
ttataatacaatatcgtacgcttcttttttcccttttgttttgattaaaagttctcttttccttccttctaagatcgtatactctaacacccttatatcc |
215 |
Q |
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|||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
14604749 |
ttataatataatatcgtacacttcttttttcccttttgttttgattaaaatttctcttttcattccttctaagatcgtatactctaacaccctcatatcc |
14604848 |
T |
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| Q |
216 |
aaccagatatgcatcttcaaagttaatttgcattctcttttgaattttaagatgattatatttagatcacaaatagacctcaccttccattgatgctatg |
315 |
Q |
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| T |
14604849 |
aaccagatatgcatcttcaaagttaatttgcattctcttttgaattttaagatgattatatttagatcacaagtagacctcaccttccattgatgctatg |
14604948 |
T |
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| Q |
316 |
atatttaacttttactctataatttgaacacctttg |
351 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
14604949 |
atatttaacttttactctataatttgaacacctttg |
14604984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 123; Significance: 4e-63; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 16 - 206
Target Start/End: Complemental strand, 51271052 - 51270864
Alignment:
| Q |
16 |
ctttttacctgttatttatttactatgaattttgtttatggcaagggagtttaatttgtttgtgaatgaagatgcctcaaaattttgatgttag-ttagt |
114 |
Q |
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|||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
51271052 |
ctttttacctgttatttatttactatgatttttgtttgtggcaggggagtttaatttgtttatgaatgaagatgcctcaaaattttgatgttagtttagt |
51270953 |
T |
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| Q |
115 |
tttataatacaatatcgtacgcttcttttttcccttttgttttgattaaaagttctcttttccttccttc--taagatcgtatactctaacacc |
206 |
Q |
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| T |
51270952 |
tttat-----aacatcgtacacttattttttcccttttgttttgattcaaagttctcttttccttccttctataagatcgtatactctaacacc |
51270864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 22774545 - 22774461
Alignment:
| Q |
16 |
ctttttacctgttatttatttactatgaattttgtttatggcaagggagtttaatttgtttgtgaatgaagatgcctcaaaattt |
100 |
Q |
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|||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
22774545 |
ctttttacctgttatttatttactatgatttttgtttgtggcaggggagtttaatttgtttatgaatgaagatgcctcaaaattt |
22774461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0153 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0153
Description:
Target: scaffold0153; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 36115 - 36189
Alignment:
| Q |
16 |
ctttttacctgttatttatttactatgaattttgtttatggcaagggagtttaatttgtttgtgaatgaagatgc |
90 |
Q |
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|||||||||||||||| ||||||||||| |||||||| ||||| ||||||||||||||||| ||||||||||||| |
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| T |
36115 |
ctttttacctgttattaatttactatgatttttgtttgtggcaggggagtttaatttgtttatgaatgaagatgc |
36189 |
T |
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