View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16754_low_33 (Length: 351)
Name: NF16754_low_33
Description: NF16754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16754_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 14 - 333
Target Start/End: Original strand, 33859831 - 33860151
Alignment:
| Q |
14 |
cagagagtttaaagaaaaatgcaagagcagattcgctaggcaagcatcaatttgtcaagctaatcatggtggtttgatgacttgattggatgagctatca |
113 |
Q |
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| T |
33859831 |
cagagagtttaaagcaaaatgcaagagcagattcgctaagcaagcatcaatttgccaagctaatcatggtggtttgatgacttgattggatgagctatca |
33859930 |
T |
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| Q |
114 |
ttttcctccatctgaagaaagctcagattctctacacgagcataactttgtctatcgacttcccacttataagaattctataaatagatgtcaccacttc |
213 |
Q |
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| T |
33859931 |
ttttcctccatctgaagaaagctcagattctctacacgaacataactttgtctatcgaattcccacttataagaattctataaatagatgtcaccacttc |
33860030 |
T |
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| Q |
214 |
ttttcaaggaggagtcatacaccatagaagaactcataaaccaagaaagggagagacaaaatgatctagggaagaaagatacaacgaaggagaat-ggga |
312 |
Q |
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| T |
33860031 |
ttttcaaggaggagtcatacaccatagaagaactcataaaccaagaaagggagagacaaaatgatctagggaagaaagatacaacgaaggagaatgggga |
33860130 |
T |
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| Q |
313 |
atcatcttcggggtctaatct |
333 |
Q |
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| T |
33860131 |
atcttctttggggtttaatct |
33860151 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 143
Target Start/End: Complemental strand, 31263 - 31221
Alignment:
| Q |
101 |
ggatgagctatcattttcctccatctgaagaaagctcagattc |
143 |
Q |
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| T |
31263 |
ggatgagctatcactttcctccatttaaagaaagctcagattc |
31221 |
T |
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