View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16754_low_34 (Length: 347)

Name: NF16754_low_34
Description: NF16754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16754_low_34
NF16754_low_34
[»] chr8 (2 HSPs)
chr8 (14-179)||(12778490-12778655)
chr8 (14-90)||(12801834-12801908)
[»] chr3 (1 HSPs)
chr3 (212-317)||(12739255-12739360)
[»] chr1 (1 HSPs)
chr1 (206-294)||(22055568-22055656)
[»] scaffold0406 (1 HSPs)
scaffold0406 (212-271)||(6193-6252)
[»] chr4 (1 HSPs)
chr4 (226-317)||(28787887-28787978)
[»] chr5 (1 HSPs)
chr5 (217-283)||(5663863-5663929)
[»] chr2 (1 HSPs)
chr2 (212-317)||(20978922-20979027)


Alignment Details
Target: chr8 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 14 - 179
Target Start/End: Original strand, 12778490 - 12778655
Alignment:
Q  14 ataatactccaacaacatctgaatcagttgaaaatactcaggtttattttacatataccttttattattgctgtcttcctcctctcaagaacaaatnnnn 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||        
T  12778490 ataatactccaacaacatctgaatcagttgaaaatactcaggtttattttacatataccttttattattgctgtcttcctcctctcaaaaacaaataaaa 12778589  T
Q  114 nnnnttgctgtcttcctactcatcatccagaaattaaatagtacttttttaaatgtttgatttttt 179  Q
        |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  12778590 aaaattgctgtcttcctactcatcatccagaaattaaatattacttttttaaatgtttgatttttt 12778655  T

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Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 90
Target Start/End: Original strand, 12801834 - 12801908
Alignment:
Q  14 ataatactccaacaacatctgaatcagttgaaaatactcaggtttattttacatataccttttattattgctgtctt 90  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||| ||||||||||||||||    
T  12801834 ataatactccaacaacatctgaatcagttgaaaatactcaggttta--ttacttatacctcttattattgctgtctt 12801908  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 212 - 317
Target Start/End: Original strand, 12739255 - 12739360
Alignment:
Q  212 tttccagattgttctattattgtctaggttaagttgtaatctagaaatatctataataatataaagtagaaaagagaaacaaaagtgtagattattatac 311  Q
    |||| |||||||||||||| | |||||||||||||  |  ||||||| |||||||||||| |   |||||||||  |||||||||  ||||||||| ||     
T  12739255 tttctagattgttctattaatatctaggttaagttacagcctagaaacatctataataatcttgtgtagaaaaggcaaacaaaagcctagattattttag 12739354  T
Q  312 ttctag 317  Q
    ||||||    
T  12739355 ttctag 12739360  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 294
Target Start/End: Complemental strand, 22055656 - 22055568
Alignment:
Q  206 taaatatttccagattgttctattattgtctaggttaagttgtaatctagaaatatctataataatataaagtagaaaagagaaacaaa 294  Q
    ||||| |||| ||||||||| |||| ||||||| |||| |||||  ||||||| |||||||||||| ||| ||| |||||  |||||||    
T  22055656 taaatgtttctagattgttcaattaatgtctagattaaattgtagcctagaaacatctataataatctaatgtataaaaggcaaacaaa 22055568  T

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Target: scaffold0406 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 212 - 271
Target Start/End: Original strand, 6193 - 6252
Alignment:
Q  212 tttccagattgttctattattgtctaggttaagttgtaatctagaaatatctataataat 271  Q
    |||| |||||||||||||| |||||||||||||||  |  ||||||| ||||||||||||    
T  6193 tttcgagattgttctattaatgtctaggttaagttaaagcctagaaacatctataataat 6252  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 226 - 317
Target Start/End: Original strand, 28787887 - 28787978
Alignment:
Q  226 tattattgtctaggttaagttgtaatctagaaatatctataataatataaagtagaaaagagaaacaaaagtgtagattattatacttctag 317  Q
    ||||||||||| | ||||||||||  ||||||||||||||||| || ||| ||| |||||  ||||||| |  ||||||||| || ||||||    
T  28787887 tattattgtctcgattaagttgtagcctagaaatatctataattatctaatgtacaaaaggaaaacaaaggcctagattattctagttctag 28787978  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 283
Target Start/End: Complemental strand, 5663929 - 5663863
Alignment:
Q  217 agattgttctattattgtctaggttaagttgtaatctagaaatatctataataatataaagtagaaa 283  Q
    |||||||||||||| ||||||  |||| |||||  ||||||| |||||||||||| ||| |||||||    
T  5663929 agattgttctattaatgtctaaattaaattgtagcctagaaacatctataataatctaatgtagaaa 5663863  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 317
Target Start/End: Complemental strand, 20979027 - 20978922
Alignment:
Q  212 tttccagattgttctattattgtctaggttaagttgtaatctagaaatatctataataatataaagtagaaaagagaaacaaaagtgtagattattatac 311  Q
    |||| |||||||||||||  ||| |||||||||||  |  ||||||| ||||||||||||||   ||||| |||  ||||||| || ||||||||| ||     
T  20979027 tttctagattgttctattcatgtttaggttaagttaaagcctagaaacatctataataatattgtgtagataaggcaaacaaaggtatagattattctag 20978928  T
Q  312 ttctag 317  Q
    ||||||    
T  20978927 ttctag 20978922  T

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