View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16754_low_35 (Length: 331)
Name: NF16754_low_35
Description: NF16754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16754_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 4 - 189
Target Start/End: Original strand, 35405967 - 35406152
Alignment:
| Q |
4 |
agcagcacttcatcaataatatcatgcaccatcatcaatacatgaatcaaatgcatattcagacaatgatgatttgatgctgaaagttcaaaagagtctc |
103 |
Q |
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| T |
35405967 |
agcagcacttcatcaataatatcatgcaccatcatcaatacatgaatcaaatgcatattcagacaatgatgatttgatgctgaaagttcaaaagagtctc |
35406066 |
T |
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| Q |
104 |
tgagcaacaccttaattaattcatctcaccaacctttcccttctttatcattaatactattaccacagaagccttggaacaagtca |
189 |
Q |
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| T |
35406067 |
tgagcaacaccttaattaattcatctcaccaacctttcccttctttatcattaatactattaccacagaagccttggaacaagtca |
35406152 |
T |
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Target: chr1; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 222 - 314
Target Start/End: Original strand, 35406185 - 35406277
Alignment:
| Q |
222 |
gtgttggtgttttagcatggtaatgcacatgaaaatcacatttttctagcttattcttgtctttctttccttgcattgaaagatatggatatt |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35406185 |
gtgttggtgttttagcatggtaatgcacatgaaaatcacatttttctagtttattcttgtctttctttccttgcattgaaagatatggatatt |
35406277 |
T |
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