View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16754_low_36 (Length: 326)
Name: NF16754_low_36
Description: NF16754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16754_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 57 - 308
Target Start/End: Original strand, 43226565 - 43226816
Alignment:
| Q |
57 |
actcaagctccaatgccacaaaatcaccttgacttgctccaccatttcatcaactccacacaccttctcattgaaaattcgatcatttctcatcttctaa |
156 |
Q |
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| T |
43226565 |
actcaagctccaatgccacaaaatcaccttgacttgctccaccatttcatcaactccacacaccttctcattaaatatgcgatcaattctcatcttctaa |
43226664 |
T |
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| Q |
157 |
accacccacacgacggcgtgccaaattaaccaagcccctcgtctaagctttttagaccgcacctcactcatccaacaagtagcatgaataaacaaattgg |
256 |
Q |
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| T |
43226665 |
accacccacacgacggcgtgccaaattaaccaagcccctcgtctaagctttttagaccgcacctcactcatccaacaagtagcatgaataaacaaattgg |
43226764 |
T |
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| Q |
257 |
gatgtgtgataaaactaaaattcagccacctcatcacctccgtccacacctt |
308 |
Q |
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| T |
43226765 |
gatgtgtgataaaactaaaattcagccacctcatcacctccgtccacacctt |
43226816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 43226458 - 43226505
Alignment:
| Q |
22 |
ccaccaccaccaaatgccgcaactgtaaaccaaccactcaagctccaa |
69 |
Q |
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| T |
43226458 |
ccaccaccaccaaatgccgcaactgtaaaccaaccactcaagctccaa |
43226505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 155 - 234
Target Start/End: Complemental strand, 15623223 - 15623144
Alignment:
| Q |
155 |
aaaccacccacacgacggcgtgccaaattaaccaagcccctcgtctaagctttttagaccgcacctcactcatccaacaa |
234 |
Q |
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| T |
15623223 |
aaaccacccaaatgaccgcatgccaaattaaccacgcccctcgtctaagctttttagaccacacctcccttgtccaacaa |
15623144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 155 - 234
Target Start/End: Complemental strand, 15647012 - 15646933
Alignment:
| Q |
155 |
aaaccacccacacgacggcgtgccaaattaaccaagcccctcgtctaagctttttagaccgcacctcactcatccaacaa |
234 |
Q |
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| T |
15647012 |
aaaccacccaaatgaccgcatgccaaattaaccacgcccctcgtctaagctttttagaccacacctcccttgtccaacaa |
15646933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 153
Target Start/End: Complemental strand, 16256842 - 16256768
Alignment:
| Q |
79 |
atcaccttgacttgctccaccatttcatcaactccacacaccttctcattgaaaattcgatcatttctcatcttc |
153 |
Q |
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| T |
16256842 |
atcaccttgacttgatccaccatttcatcaaccccacaaactttgttattaaaaaccctatcatttctcatcttc |
16256768 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 308
Target Start/End: Complemental strand, 655248 - 655115
Alignment:
| Q |
175 |
tgccaaattaaccaagcccctcgtctaagctttttagaccgcacctcactcatccaacaagtagcatgaataaacaaattgggatgtgtgataaaactaa |
274 |
Q |
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|||||||||||||| ||||| || |||||||| || |||| ||||| || ||||||| || ||||||| ||| || ||| | ||||||||| ||| |
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| T |
655248 |
tgccaaattaaccacgccccgcgcctaagcttctttgaccaaacctccctagcccaacaaataacatgaatgaacgggtttggaggggtgataaaattaa |
655149 |
T |
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| Q |
275 |
aattcagccacctcatcacctccgtccacacctt |
308 |
Q |
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|||||| |||| |||| |||| | |||||||||| |
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| T |
655148 |
aattcaaccacttcattaccttcctccacacctt |
655115 |
T |
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