View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16754_low_39 (Length: 316)
Name: NF16754_low_39
Description: NF16754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16754_low_39 |
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Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 6 - 303
Target Start/End: Original strand, 2035862 - 2036156
Alignment:
| Q |
6 |
aacctgatccatatatcaaatcctgaatccccaaattctgaaatcaatttccttctttctcgcgaactctcccttcatcccatgacttctttattggatt |
105 |
Q |
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| T |
2035862 |
aaccttatccatatatcaaatcctaaatccccaaattctgaaatcaatttccttctttctcgcgaa---tcccttcatcccatgacttctttattggatt |
2035958 |
T |
|
| Q |
106 |
tttaaattgttgttaacgaggaagatgaggaagccgatgatttttgaatgaacccttacaaactcaattgagtgaaattggagatggagtattaactgtt |
205 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
2035959 |
tttaaattgttgttaacgaggaagatgaggaagccggtgatttttgaatgaacccttacaaactcaattgagtgaaattggagatggagtattaactatt |
2036058 |
T |
|
| Q |
206 |
atgtgggttttttgttctttcatgttggctatagtttttagtgccttgatcaaagaagccgaatgcagaagaaaaaagaagagaaatcaatgatgatg |
303 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2036059 |
atgtgggttttttgttctttcatgttggctatagtttctagtgccttgatcaaagaagccgaatgcagaagataaaagaagagaaatcaatgatgatg |
2036156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 19578443 - 19578755
Alignment:
| Q |
1 |
aatacaacctgatccatatatcaaatcctgaatccccaaattctgaaatcaatttccttctttctcgcgaactctcccttcatcccatgacttctttatt |
100 |
Q |
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||||||||||||||||||||||||| ||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
19578443 |
aatacaacctgatccatatatcaaaccctaaatccccaaattttgaaatcaatctccttctttctcgcgaactctcccttcatcccatgacttctctatt |
19578542 |
T |
|
| Q |
101 |
ggatttttaaattgttgttaacgaggaagatgaggaagccgatgatttttgaatgaacccttacaaactcaattgagtgaaattggagatggagtattaa |
200 |
Q |
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|||||||| ||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19578543 |
ttatttttaa-ttgttgttaacaaggaagatgaggaagccagtaatttttgaatgaacccttacaaactcaattgagtgaaattggagatggagtattaa |
19578641 |
T |
|
| Q |
201 |
ctgttatgtgggttttttgttctttcatgttggctatagtttttagtgccttgatcaaagaagccgaatgcag-----aagaaaaaagaagagaaatcaa |
295 |
Q |
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||||||||||||||||||||||||||||||||| || ||||||| ||||||| |||||||||||||||||||| |||||| || ||||||||||| |
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| T |
19578642 |
ctgttatgtgggttttttgttctttcatgttgggtacagtttttggtgccttcatcaaagaagccgaatgcaggaaaaaagaaagaaagagagaaatcaa |
19578741 |
T |
|
| Q |
296 |
tgatgatgatgatg |
309 |
Q |
| |
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|||||||||||||| |
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| T |
19578742 |
tgatgatgatgatg |
19578755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 19594884 - 19595196
Alignment:
| Q |
1 |
aatacaacctgatccatatatcaaatcctgaatccccaaattctgaaatcaatttccttctttctcgcgaactctcccttcatcccatgacttctttatt |
100 |
Q |
| |
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||||||||||||||||||||||||| ||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
19594884 |
aatacaacctgatccatatatcaaaccctaaatccccaaattttgaaatcaatctccttctttctcgcgaactctcccttcatcccatgacttctctatt |
19594983 |
T |
|
| Q |
101 |
ggatttttaaattgttgttaacgaggaagatgaggaagccgatgatttttgaatgaacccttacaaactcaattgagtgaaattggagatggagtattaa |
200 |
Q |
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|||||||| ||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19594984 |
ttatttttaa-ttgttgttaacaaggaagatgaggaagccagtaatttttgaatgaacccttacaaactcaattgagtgaaattggagatggagtattaa |
19595082 |
T |
|
| Q |
201 |
ctgttatgtgggttttttgttctttcatgttggctatagtttttagtgccttgatcaaagaagccgaatgcag-----aagaaaaaagaagagaaatcaa |
295 |
Q |
| |
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||||||||||||||||||||||||||||||||| || ||||||| ||||||| |||||||||||||||||||| |||||| || ||||||||||| |
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| T |
19595083 |
ctgttatgtgggttttttgttctttcatgttgggtacagtttttggtgccttcatcaaagaagccgaatgcaggaaaaaagaaagaaagagagaaatcaa |
19595182 |
T |
|
| Q |
296 |
tgatgatgatgatg |
309 |
Q |
| |
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|||||||||||||| |
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| T |
19595183 |
tgatgatgatgatg |
19595196 |
T |
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