View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16754_low_4 (Length: 536)
Name: NF16754_low_4
Description: NF16754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16754_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 68; Significance: 4e-30; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 318 - 472
Target Start/End: Complemental strand, 8447806 - 8447640
Alignment:
| Q |
318 |
atttcaactcctcttttcaaaacatttctatatacaaacggtttccttgcaataatttaattttctttt-------------atttgtttcttatgcatc |
404 |
Q |
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| T |
8447806 |
atttcaattcctctttttaaaacatttctgtatattgatggtttcctttcaataatttaattttcttgtcaagaatgttttaatttgtttcttctgcata |
8447707 |
T |
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| Q |
405 |
taaatgatcaaagaatatatattttgtagttccataataacaacatgaatcaaaagacacaagaggaa |
472 |
Q |
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| T |
8447706 |
taaatgatcaaagaatatatattttgtag-tccataataacaacatggatcaaaagacacaagaggaa |
8447640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 318 - 434
Target Start/End: Complemental strand, 8235893 - 8235764
Alignment:
| Q |
318 |
atttcaactcctcttttcaaaacatttctatatacaaacggtttccttgcaataatttaattttctttt-------------atttgtttcttatgcatc |
404 |
Q |
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| T |
8235893 |
atttcaactcctcttttaaaaacattgctatagatagatggtttccttgcaataatttaattttcttttcaagaatgcgttgatttgtttcttctgcatc |
8235794 |
T |
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| Q |
405 |
taaatgatcaaagaatatatattttgtagt |
434 |
Q |
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| T |
8235793 |
taaatgatcaaagaatatatattttgtagt |
8235764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 8246797 - 8246752
Alignment:
| Q |
23 |
tttttattatatatgtgcattttcaggagtcttatttcatttatat |
68 |
Q |
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| T |
8246797 |
tttttattatatatgtgcattttcaggagtcttatttcatttatat |
8246752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 124 - 197
Target Start/End: Complemental strand, 8448113 - 8448040
Alignment:
| Q |
124 |
ctacggaatcaatcaagttgaatcgagaaccaatcagttcgtcggttggtttcattctaataacatggaagttt |
197 |
Q |
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| T |
8448113 |
ctaccgaatcaatcaagttgaatcgagaaccaatcaatttgtaggttagtttcattcacgtaacattgaagttt |
8448040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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