View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16754_low_40 (Length: 314)

Name: NF16754_low_40
Description: NF16754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16754_low_40
NF16754_low_40
[»] chr1 (1 HSPs)
chr1 (14-306)||(38928050-38928343)


Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 14 - 306
Target Start/End: Complemental strand, 38928343 - 38928050
Alignment:
Q  14 tcatctagaacaattggaattccaatgtcttatccgtaacattccatcaaacattttcattcaacgccataattagccacgttggacagaacttcttaag 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38928343 tcatctagaacaattggaattccaatgtcttatccgtaacattccatcaaacattttcattcaacgccataattagccacgttggacagaacttcttaag 38928244  T
Q  114 aacacctatatatggtaaaatattccatatactgcaccattgtctgtttcgactctcccatttgtttcaacaacgacaaaccaatcatggaattacggct 213  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  38928243 aacacctatatatggtaaaatattccatatactacaccattgtttgtttcgactctcccatttgtttcaacaacgacaaacaaattatggaattacggct 38928144  T
Q  214 acattttaag-aaaacatcgaaacatatatcatcccatgattcctccaatgttaagattccataccgtaaacatgctgaaccattcttcttctc 306  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  38928143 acattttaagaaaaacatcgaaacatatatcatcccatgattcctccaatgttaagattccataccgtaaacatgctgaaccattctttttctc 38928050  T

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