View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16754_low_43 (Length: 284)

Name: NF16754_low_43
Description: NF16754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16754_low_43
NF16754_low_43
[»] chr7 (7 HSPs)
chr7 (9-72)||(21851871-21851934)
chr7 (121-215)||(13420183-13420277)
chr7 (121-215)||(37350098-37350192)
chr7 (145-215)||(12180560-12180630)
chr7 (146-215)||(37348803-37348872)
chr7 (172-215)||(21017729-21017772)
chr7 (146-215)||(11671208-11671277)
[»] chr8 (6 HSPs)
chr8 (121-215)||(39885973-39886067)
chr8 (145-215)||(5462002-5462072)
chr8 (145-215)||(3157958-3158028)
chr8 (121-215)||(39884684-39884778)
chr8 (172-215)||(27824480-27824523)
chr8 (162-209)||(45437755-45437802)
[»] chr5 (3 HSPs)
chr5 (145-215)||(16310020-16310090)
chr5 (145-215)||(27756706-27756776)
chr5 (145-215)||(16308634-16308704)
[»] chr2 (9 HSPs)
chr2 (145-215)||(44465011-44465081)
chr2 (144-215)||(15346932-15347003)
chr2 (144-215)||(38729982-38730053)
chr2 (136-199)||(44421254-44421317)
chr2 (145-215)||(16142294-16142364)
chr2 (145-215)||(38728252-38728322)
chr2 (164-217)||(169225-169278)
chr2 (146-215)||(472788-472857)
chr2 (146-215)||(34591792-34591861)
[»] chr6 (3 HSPs)
chr6 (146-215)||(4296328-4296397)
chr6 (115-215)||(10711807-10711907)
chr6 (169-215)||(10699298-10699344)
[»] chr3 (3 HSPs)
chr3 (146-215)||(30700364-30700433)
chr3 (171-215)||(41879992-41880036)
chr3 (146-215)||(22942406-22942475)
[»] chr4 (7 HSPs)
chr4 (131-215)||(22307739-22307823)
chr4 (145-215)||(42889732-42889801)
chr4 (136-215)||(54536608-54536687)
chr4 (121-215)||(22309035-22309129)
chr4 (146-210)||(44445048-44445112)
chr4 (169-216)||(33607535-33607582)
chr4 (145-205)||(25351721-25351781)
[»] chr1 (8 HSPs)
chr1 (144-215)||(7185776-7185847)
chr1 (131-215)||(18309153-18309237)
chr1 (145-215)||(50316971-50317041)
chr1 (146-215)||(7001265-7001334)
chr1 (146-215)||(13209643-13209712)
chr1 (146-217)||(3894084-3894155)
chr1 (145-215)||(24438868-24438938)
chr1 (131-199)||(35973181-35973249)
[»] scaffold0288 (1 HSPs)
scaffold0288 (121-212)||(19543-19633)
[»] scaffold0672 (1 HSPs)
scaffold0672 (120-215)||(425-520)


Alignment Details
Target: chr7 (Bit Score: 52; Significance: 7e-21; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 21851871 - 21851934
Alignment:
Q  9 agtgagatgaatattagtactatgataatttgaaattataaatatgaataaaaaacaataaata 72  Q
    |||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  21851871 agtgtgatgcatattagtactatgataatgtgaaattataaatatgaataaaaaacaataaata 21851934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 121 - 215
Target Start/End: Original strand, 13420183 - 13420277
Alignment:
Q  121 tcatcatccatttgtcacatacatgtttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttttagaa 215  Q
    ||||||||| |||| |||||| | ||||||||||  |||| ||||||||||||| |||| ||||||| |||||||||||| || |||||||||||    
T  13420183 tcatcatccgtttgccacatagacgtttttgtaacggattatgacggcagggactaaaaccaaaatgcttataacttacaggggttgttttagaa 13420277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 121 - 215
Target Start/End: Original strand, 37350098 - 37350192
Alignment:
Q  121 tcatcatccatttgtcacatacatgtttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttttagaa 215  Q
    ||||| ||| |||| |||||| | |||||||||| ||||| ||||||||||||| |||| ||||||| |||||||||| | || |||||||||||    
T  37350098 tcatcctccgtttgccacatagacgtttttgtaacagattatgacggcagggactaaaaccaaaatgcttataacttataggggttgttttagaa 37350192  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 215
Target Start/End: Original strand, 12180560 - 12180630
Alignment:
Q  145 gtttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttttagaa 215  Q
    |||||||||| ||||  |||||| |||||| |||||||||| |||| ||||||||| ||||||||||||||    
T  12180560 gtttttgtaacagatgctgacgggagggacgaaaatcaaaacgtttgtaacttacagggtttgttttagaa 12180630  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 215
Target Start/End: Complemental strand, 37348872 - 37348803
Alignment:
Q  146 tttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttttagaa 215  Q
    ||||||||| ||||  |||||||| |||| |||| ||||| |||||||||||||| || |||||||||||    
T  37348872 tttttgtaacagataatgacggcatggactaaaaccaaaacgtttataacttacaaggattgttttagaa 37348803  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 21017729 - 21017772
Alignment:
Q  172 gaccaaaatcaaaatgtttataacttacacggtttgttttagaa 215  Q
    |||||||| |||||||||||||||||||| || |||||||||||    
T  21017729 gaccaaaaccaaaatgtttataacttacaggggttgttttagaa 21017772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 215
Target Start/End: Original strand, 11671208 - 11671277
Alignment:
Q  146 tttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttttagaa 215  Q
    ||||||||| ||||  |||||  |||||| ||||||||||  ||| ||||||||| ||||||||||||||    
T  11671208 tttttgtaacagatgctgacgagagggacgaaaatcaaaacatttgtaacttacagggtttgttttagaa 11671277  T

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Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 121 - 215
Target Start/End: Original strand, 39885973 - 39886067
Alignment:
Q  121 tcatcatccatttgtcacatacatgtttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttttagaa 215  Q
    ||||| ||| |||| |||||| | |||||||||| ||||| ||||||||||||| |||| ||||||| |||||||||||| || |||||||||||    
T  39885973 tcatcctccgtttgccacatagacgtttttgtaacagattatgacggcagggactaaaaccaaaatgcttataacttacaggggttgttttagaa 39886067  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 215
Target Start/End: Complemental strand, 5462072 - 5462002
Alignment:
Q  145 gtttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttttagaa 215  Q
    |||||||||| ||||  |||||||||||||||||| |||||||||||||| ||||| ||| ||||||||||    
T  5462072 gtttttgtaacagatgctgacggcagggaccaaaagcaaaatgtttataaattacagggtctgttttagaa 5462002  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 215
Target Start/End: Original strand, 3157958 - 3158028
Alignment:
Q  145 gtttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttttagaa 215  Q
    |||| ||||| ||||  |||||||||||||| ||| |||||||||||||||||||| ||| ||||||||||    
T  3157958 gtttgtgtaacagatgctgacggcagggaccgaaagcaaaatgtttataacttacagggtctgttttagaa 3158028  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 121 - 215
Target Start/End: Complemental strand, 39884778 - 39884684
Alignment:
Q  121 tcatcatccatttgtcacatacatgtttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttttagaa 215  Q
    ||||| ||| |||| |||||| | |||||||||| ||||| ||| ||||||||| |||| ||||||| |||||||||||| || || ||||||||    
T  39884778 tcatcctccgtttgccacatagacgtttttgtaacagattatgaaggcagggactaaaaccaaaatgcttataacttacaagggttattttagaa 39884684  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 27824480 - 27824523
Alignment:
Q  172 gaccaaaatcaaaatgtttataacttacacggtttgttttagaa 215  Q
    |||||||||||||| |||||||||||| | ||||||||||||||    
T  27824480 gaccaaaatcaaaacgtttataacttatagggtttgttttagaa 27824523  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 162 - 209
Target Start/End: Complemental strand, 45437802 - 45437755
Alignment:
Q  162 tgacggcagggaccaaaatcaaaatgtttataacttacacggtttgtt 209  Q
    |||||||| ||||||||| |||||||||||||| ||||| ||||||||    
T  45437802 tgacggcatggaccaaaaccaaaatgtttataatttacaaggtttgtt 45437755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 145 - 215
Target Start/End: Original strand, 16310020 - 16310090
Alignment:
Q  145 gtttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttttagaa 215  Q
    |||||||||| ||||  |||||||||||||||||| |||||||||||||||||||| ||| ||||||||||    
T  16310020 gtttttgtaacagatgctgacggcagggaccaaaagcaaaatgtttataacttacaaggtctgttttagaa 16310090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 215
Target Start/End: Original strand, 27756706 - 27756776
Alignment:
Q  145 gtttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttttagaa 215  Q
    |||||||||| | ||  |||||||||||||||||| |||||||||||||| ||||| ||||||||||||||    
T  27756706 gtttttgtaacaaatgctgacggcagggaccaaaagcaaaatgtttataatttacagggtttgttttagaa 27756776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 215
Target Start/End: Complemental strand, 16308704 - 16308634
Alignment:
Q  145 gtttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttttagaa 215  Q
    |||||||||| ||||  |||||| ||||||||||| || || | |||||||||||| ||| ||||||||||    
T  16308704 gtttttgtaacagatgatgacggtagggaccaaaagcacaaggcttataacttacagggtctgttttagaa 16308634  T

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Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 145 - 215
Target Start/End: Original strand, 44465011 - 44465081
Alignment:
Q  145 gtttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttttagaa 215  Q
    |||||||||| ||||  |||||||||||||||||| |||||||||||||||||||| ||| ||||||||||    
T  44465011 gtttttgtaacagatactgacggcagggaccaaaagcaaaatgtttataacttacaaggtctgttttagaa 44465081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 215
Target Start/End: Complemental strand, 15347003 - 15346932
Alignment:
Q  144 tgtttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttttagaa 215  Q
    ||||||||||| ||||| |||||||| ||||||||| ||||| |||||||| ||||| || |||||||||||    
T  15347003 tgtttttgtaacagattatgacggcaaggaccaaaagcaaaacgtttataatttacaagggttgttttagaa 15346932  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 144 - 215
Target Start/End: Original strand, 38729982 - 38730053
Alignment:
Q  144 tgtttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttttagaa 215  Q
    ||||||||||| |||   | ||||||||||| |||||||||| |||| ||||||||| ||||||||||||||    
T  38729982 tgtttttgtaacagaggctaacggcagggacgaaaatcaaaaggtttgtaacttacagggtttgttttagaa 38730053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 199
Target Start/End: Original strand, 44421254 - 44421317
Alignment:
Q  136 cacatacatgtttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttac 199  Q
    |||||| | |||||||||| |||| |||||||||| |||||||| ||||| |||||||||||||    
T  44421254 cacataaacgtttttgtaacagatggtgacggcagagaccaaaagcaaaacgtttataacttac 44421317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 215
Target Start/End: Complemental strand, 16142364 - 16142294
Alignment:
Q  145 gtttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttttagaa 215  Q
    |||||||||| ||||  |||||| |||| | |||||||||| |||| ||||||||| ||||||||||||||    
T  16142364 gtttttgtaacagatgctgacgggagggccgaaaatcaaaacgtttgtaacttacagggtttgttttagaa 16142294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 215
Target Start/End: Complemental strand, 38728322 - 38728252
Alignment:
Q  145 gtttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttttagaa 215  Q
    ||||| |||| ||||| |||||| |||||| |||||||||| |||| |||||| || ||||||||||||||    
T  38728322 gttttcgtaacagattatgacgggagggacgaaaatcaaaacgtttgtaacttgcagggtttgttttagaa 38728252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 217
Target Start/End: Original strand, 169225 - 169278
Alignment:
Q  164 acggcagggaccaaaatcaaaatgtttataacttacacggtttgttttagaaag 217  Q
    ||||||| |||||||| ||||| |||||||||||||| |  |||||||||||||    
T  169225 acggcagagaccaaaaccaaaacgtttataacttacaagagttgttttagaaag 169278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 215
Target Start/End: Complemental strand, 472857 - 472788
Alignment:
Q  146 tttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttttagaa 215  Q
    ||||||||| ||||  |||| | ||||||||||| ||||| |||||||||||||| |  |||||||||||    
T  472857 tttttgtaacagatgatgactgtagggaccaaaaacaaaacgtttataacttacatgagttgttttagaa 472788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 215
Target Start/End: Complemental strand, 34591861 - 34591792
Alignment:
Q  146 tttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttttagaa 215  Q
    ||||||||||| ||   |||| |||||||||||| ||||| |||||||||||| |  |||||||||||||    
T  34591861 tttttgtaatatatgaggacgacagggaccaaaagcaaaacgtttataacttaaatagtttgttttagaa 34591792  T

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Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 146 - 215
Target Start/End: Original strand, 4296328 - 4296397
Alignment:
Q  146 tttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttttagaa 215  Q
    ||||||||||||||  |||||||| ||||||||| ||||| |||||||||||||||||||| ||||||||    
T  4296328 tttttgtaatagatgatgacggcatggaccaaaaccaaaacgtttataacttacacggtttattttagaa 4296397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 215
Target Start/End: Original strand, 10711807 - 10711907
Alignment:
Q  115 gccagatcatcatccatttgtcacatacatgtttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttttaga 214  Q
    |||| |||||| || ||||| |||||| || ||||||||||||||  |||||||||| | ||||  |||||  ||||||| ||||| || ||||||||||    
T  10711807 gccacatcatcctctatttgccacataaatatttttgtaatagatgatgacggcaggaatcaaagccaaaacatttataatttacatgggttgttttaga 10711906  T
Q  215 a 215  Q
    |    
T  10711907 a 10711907  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 215
Target Start/End: Complemental strand, 10699344 - 10699298
Alignment:
Q  169 agggaccaaaatcaaaatgtttataacttacacggtttgttttagaa 215  Q
    ||||||||||||||||| ||||||||||||||  | |||||||||||    
T  10699344 agggaccaaaatcaaaacgtttataacttacagaggttgttttagaa 10699298  T

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Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 146 - 215
Target Start/End: Complemental strand, 30700433 - 30700364
Alignment:
Q  146 tttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttttagaa 215  Q
    ||||||||| ||||  |||||||||||||||||| |||||||||||||||||||| ||| ||||||||||    
T  30700433 tttttgtaacagatgctgacggcagggaccaaaagcaaaatgtttataacttacagggtgtgttttagaa 30700364  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 41880036 - 41879992
Alignment:
Q  171 ggaccaaaatcaaaatgtttataacttacacggtttgttttagaa 215  Q
    |||| |||||||||| |||||||||||||| ||||||||||||||    
T  41880036 ggacgaaaatcaaaacgtttataacttacaaggtttgttttagaa 41879992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 215
Target Start/End: Complemental strand, 22942475 - 22942406
Alignment:
Q  146 tttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttttagaa 215  Q
    ||||||||| ||||  ||||||  |||||||||| ||||| ||||||||||||||  | |||||||||||    
T  22942475 tttttgtaacagatgatgacggatgggaccaaaaccaaaacgtttataacttacataggttgttttagaa 22942406  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 131 - 215
Target Start/End: Complemental strand, 22307823 - 22307739
Alignment:
Q  131 tttgtcacatacatgtttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttttagaa 215  Q
    |||| |||||| | |||||||||| ||||| ||||||||||||| |||| ||||||| |||||||||||| || |||||||||||    
T  22307823 tttgccacatagacgtttttgtaacagattatgacggcagggactaaaaccaaaatgcttataacttacaagggttgttttagaa 22307739  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 215
Target Start/End: Original strand, 42889732 - 42889801
Alignment:
Q  145 gtttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttttagaa 215  Q
    |||||||||| ||| | |||||||||||||||||| |||||||||||||||||||| ||| ||||||||||    
T  42889732 gtttttgtaacagagt-tgacggcagggaccaaaagcaaaatgtttataacttacatggtctgttttagaa 42889801  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 215
Target Start/End: Original strand, 54536608 - 54536687
Alignment:
Q  136 cacatacatgtttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttttagaa 215  Q
    |||||| | |||||||||| |||| ||||| ||||||||||||| ||||| |||||||| ||||| ||| ||||||||||    
T  54536608 cacataaacgtttttgtaacagatggtgacagcagggaccaaaagcaaaacgtttataatttacatggtctgttttagaa 54536687  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 121 - 215
Target Start/End: Original strand, 22309035 - 22309129
Alignment:
Q  121 tcatcatccatttgtcacatacatgtttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttttagaa 215  Q
    ||||| ||| |||| |||||| | ||||||||||  |||| |||||||| |||| |||| ||||||| |||||||||||| || |||||||||||    
T  22309035 tcatcctccgtttgccacatagacgtttttgtaactgattatgacggcacggactaaaaccaaaatgcttataacttacaggggttgttttagaa 22309129  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 210
Target Start/End: Original strand, 44445048 - 44445112
Alignment:
Q  146 tttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttt 210  Q
    ||||||||| |||| ||||||| | |||||||| | |||| |||||||||||||| |||||||||    
T  44445048 tttttgtaacagatggtgacggtaaggaccaaagtaaaaaagtttataacttacaaggtttgttt 44445112  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 33607582 - 33607535
Alignment:
Q  169 agggaccaaaatcaaaatgtttataacttacacggtttgttttagaaa 216  Q
    |||||| |||| ||||||||||| |||||||| |||||||||||||||    
T  33607582 agggactaaaaccaaaatgtttacaacttacagggtttgttttagaaa 33607535  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 205
Target Start/End: Original strand, 25351721 - 25351781
Alignment:
Q  145 gtttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtt 205  Q
    ||||||||||  |||  |||| ||||||||||||| ||||| |||||||||||||| ||||    
T  25351721 gtttttgtaactgatgatgacagcagggaccaaaaccaaaacgtttataacttacagggtt 25351781  T

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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 144 - 215
Target Start/End: Original strand, 7185776 - 7185847
Alignment:
Q  144 tgtttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttttagaa 215  Q
    ||||||||||| ||||  |||||| ||||||||||| |||||||||||||||||||| ||| ||||||||||    
T  7185776 tgtttttgtaacagatgctgacggaagggaccaaaagcaaaatgtttataacttacagggtctgttttagaa 7185847  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 131 - 215
Target Start/End: Complemental strand, 18309237 - 18309153
Alignment:
Q  131 tttgtcacatacatgtttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttttagaa 215  Q
    ||||||||||| | ||||||||||||||   ||||| |||| ||||||| ||||| |||||||||||||| || |||||||||||    
T  18309237 tttgtcacatatacgtttttgtaatagacgatgacgacaggaaccaaaaccaaaacgtttataacttacaaggattgttttagaa 18309153  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 215
Target Start/End: Original strand, 50316971 - 50317041
Alignment:
Q  145 gtttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttttagaa 215  Q
    |||||||||| ||||  |||||| |||||| |||||||||| |||| ||||||||| ||||||||||||||    
T  50316971 gtttttgtaacagatgctgacgggagggacgaaaatcaaaacgtttgtaacttacagggtttgttttagaa 50317041  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 146 - 215
Target Start/End: Complemental strand, 7001334 - 7001265
Alignment:
Q  146 tttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttttagaa 215  Q
    ||||||||||||||  ||||| ||| ||||||||| |||| ||||||||||||||  |||||||||||||    
T  7001334 tttttgtaatagatgatgacgacagagaccaaaattaaaacgtttataacttacaatgtttgttttagaa 7001265  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 146 - 215
Target Start/End: Complemental strand, 13209712 - 13209643
Alignment:
Q  146 tttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttttagaa 215  Q
    ||||||||| |||| ||||||||||||||||||| ||||| ||||||| |||||| ||| | ||||||||    
T  13209712 tttttgtaacagatggtgacggcagggaccaaaagcaaaacgtttatatcttacagggtctattttagaa 13209643  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 217
Target Start/End: Original strand, 3894084 - 3894155
Alignment:
Q  146 tttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttttagaaag 217  Q
    ||||||||| ||||  |||| ||||||||||||| |||||||||||| ||||||| || || ||||||||||    
T  3894084 tttttgtaacagatgatgacagcagggaccaaaagcaaaatgtttattacttacaagggttattttagaaag 3894155  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 215
Target Start/End: Original strand, 24438868 - 24438938
Alignment:
Q  145 gtttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttttagaa 215  Q
    |||||||||| ||||  ||||||  ||||| |||||||||| |||| ||||||||| ||||||||||||||    
T  24438868 gtttttgtaacagatgctgacgggtgggacgaaaatcaaaacgtttgtaacttacagggtttgttttagaa 24438938  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 199
Target Start/End: Original strand, 35973181 - 35973249
Alignment:
Q  131 tttgtcacatacatgtttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttac 199  Q
    |||| |||||| | |||||||||| |||| |||||||||  |||||||| ||||| |||||||||||||    
T  35973181 tttgccacatagacgtttttgtaacagatggtgacggcaatgaccaaaaccaaaacgtttataacttac 35973249  T

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Target: scaffold0288 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 121 - 212
Target Start/End: Complemental strand, 19633 - 19543
Alignment:
Q  121 tcatcatccatttgtcacatacatgtttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgtttta 212  Q
    ||||| || ||||| |||||| | |||||||||||||||||||||||||  |||||||| |||| |  |||||||||||| |||||||||||    
T  19633 tcatcctctatttgccacatagacgtttttgtaatagattgtgacggcaatgaccaaaaccaaact-attataacttacaaggtttgtttta 19543  T

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Target: scaffold0672 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0672
Description:

Target: scaffold0672; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 120 - 215
Target Start/End: Original strand, 425 - 520
Alignment:
Q  120 atcatcatccatttgtcacatacatgtttttgtaatagattgtgacggcagggaccaaaatcaaaatgtttataacttacacggtttgttttagaa 215  Q
    |||||| |||||||  |||||||| ||||| | || ||||  ||| ||  |||||||||| ||||| |||||||||||||| ||| ||||||||||    
T  425 atcatcctccatttcccacatacacgttttggcaacagatgatgatggttgggaccaaaaccaaaacgtttataacttacagggtctgttttagaa 520  T

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