View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16754_low_45 (Length: 282)
Name: NF16754_low_45
Description: NF16754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16754_low_45 |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 7 - 275
Target Start/End: Complemental strand, 45127469 - 45127201
Alignment:
| Q |
7 |
agccattgttaaacagtatgtcaaacttgatattagaaactgctactttgtaattgtcaaagtgatacgtgtatgtcaaagaaaagaatgaatcctttat |
106 |
Q |
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| T |
45127469 |
agccattgttaaacagtctgtcaaacttgatattagaaactgctaccttataattgtcaaagtgatacgtgtatgtcaaagaaaggaatgaatcctttat |
45127370 |
T |
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| Q |
107 |
atagagaaaatgcaagcactggaaacaacacgctacatttaatgcgaccttaaaacttctcatagattatccccattccacacaaaacagttaatgtaaa |
206 |
Q |
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| T |
45127369 |
atagagaaaatgcaagcaccggaaacaacacactacatttaatgcgacctttaaacttctcatagatcatccccattccacacaaaacagttaatgtaaa |
45127270 |
T |
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| Q |
207 |
ataggcacagatgcataggaaagaaannnnnnngcacgacatccaaaattattgttgtggcctatgata |
275 |
Q |
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||| |||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||| |
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| T |
45127269 |
atatgcacagatgcataggaaagaaatttttttgcacaacatccaaaattattgttgtggcttatgata |
45127201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 29393972 - 29394015
Alignment:
| Q |
187 |
cacaaaacagttaatgtaaaataggcacagatgcataggaaaga |
230 |
Q |
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| T |
29393972 |
cacaaaacagttaatgtaaaataggcacagatgcataggaaaga |
29394015 |
T |
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