View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16754_low_46 (Length: 268)
Name: NF16754_low_46
Description: NF16754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16754_low_46 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 76 - 268
Target Start/End: Original strand, 3960310 - 3960502
Alignment:
| Q |
76 |
aaacccccaaaaacaaaagccaaaagatcagccaaccgcttaactactaccctcaaccgatgcccctggacactccagaccnnnnnnncaaccgaaaacc |
175 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||| |
|
|
| T |
3960310 |
aaacccccaaaaacaaaagccaaaagatcagccaaccgcttaactactaccctcaaccaatgcccctggacgctccagaccaaaaaaataaccgaaaacc |
3960409 |
T |
|
| Q |
176 |
actgctgcacccaaccaatacgaaaccaaaaccaagtgcgacacgaaacagcagcaaaaccgggtcaactcagcagcagaacagaccacacca |
268 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
3960410 |
actgctgcacccgaccaatacgaaaccaaaaccaagtccgacacgaaacagcagcaaaaccgggtcaactcagcaacagaacagaccacacca |
3960502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 33 - 267
Target Start/End: Original strand, 3959887 - 3960124
Alignment:
| Q |
33 |
atatgcgacccaagtgtgaatacagtgattccgtatacatgagaaacccccaaaaacaaaagccaaaagatcagccaaccgcttaactactaccctcaac |
132 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
3959887 |
atatgcggcctaagtgtgaatacagtgattccgtatacatgaggaacccccaaaaacaaaagccaaaagatcagccaaccacctaactactaccctcaac |
3959986 |
T |
|
| Q |
133 |
cgatgcccctggacactccagaccnnnnnnncaaccgaaaaccactgctgcacccaaccaatacgaaaccaaaaccaagtgcgacacgaaacagcagcaa |
232 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||||||||||||||| || ||||||||| |||||||||| || ||||||||||||||| |
|
|
| T |
3959987 |
cgatgcccctggacactcaagacaaaaaaaacaaccgaaaaccactgctgcacccgactaatacgaaatcaaaaccaagccggaaacgaaacagcagcaa |
3960086 |
T |
|
| Q |
233 |
aaccgggtcaact---cagcagcagaacagaccacacc |
267 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||| |
|
|
| T |
3960087 |
aaccaggtcaactcggcagcagcagaacagaccacacc |
3960124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University