View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16754_low_47 (Length: 260)
Name: NF16754_low_47
Description: NF16754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16754_low_47 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 14 - 245
Target Start/End: Original strand, 10313899 - 10314130
Alignment:
| Q |
14 |
cagagaccccaagacatgtttgatttcaatgtcattaataattagttaattgcagcaagaattgatagagaacatgctttgaattttaccacaatataag |
113 |
Q |
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| T |
10313899 |
cagagaccccaagacatgtttgatttcaatgtcattaataattagttaattgcagtaagaattgatagagaacatgctttcaattttaccacagtataag |
10313998 |
T |
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| Q |
114 |
agtttggagagtaacgacaaagacaaattaaaaccaattaaaggactgaatacattgaattgaagattacaatagaagaccaatcacagtgcaagatcaa |
213 |
Q |
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| T |
10313999 |
agtttgcagagtaacgacaaagacaaattaaaaccaattaaaggactgaatacattgaattgaagattacaatagaagaccaatcacagtgcaagatcaa |
10314098 |
T |
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| Q |
214 |
gacatttacctaagaataagatacgactttgt |
245 |
Q |
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| T |
10314099 |
gacatttacctaagaataagatacgactttgt |
10314130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 14 - 245
Target Start/End: Original strand, 15828239 - 15828470
Alignment:
| Q |
14 |
cagagaccccaagacatgtttgatttcaatgtcattaataattagttaattgcagcaagaattgatagagaacatgctttgaattttaccacaatataag |
113 |
Q |
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| T |
15828239 |
cagagaccccaagacatgtttgatttcaatgtcattaataaatagttaattgcagtaagaattgatagagaacatgctttcaattttaccacaatataag |
15828338 |
T |
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| Q |
114 |
agtttggagagtaacgacaaagacaaattaaaaccaattaaaggactgaatacattgaattgaagattacaatagaagaccaatcacagtgcaagatcaa |
213 |
Q |
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| T |
15828339 |
agtttgcagagtaacgacaaagacaaattaaaaccaattaaaggactgaatacattgaattgaagattacaatagaagactaatcacagtgcatgatcaa |
15828438 |
T |
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| Q |
214 |
gacatttacctaagaataagatacgactttgt |
245 |
Q |
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| T |
15828439 |
gacatttacctaagaataagatacgactttgt |
15828470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 90
Target Start/End: Original strand, 52220054 - 52220111
Alignment:
| Q |
33 |
ttgatttcaatgtcattaataattagttaattgcagcaagaattgatagagaacatgc |
90 |
Q |
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| T |
52220054 |
ttgatttcaatgccactgataattagttaattgcaataagcattgaaagagaacatgc |
52220111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 14 - 245
Target Start/End: Original strand, 16428074 - 16428306
Alignment:
| Q |
14 |
cagagaccccaagacatgtttgatttcaatgtcattaataattagttaattgcagcaagaattgatagagaacatgctttgaattttaccacaatataag |
113 |
Q |
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| T |
16428074 |
cagagaccccaagacatgtttgatttcaatgtcattaataattagttaattgcagtaagaattgatagagaacatgctttcaattttaccacaatataag |
16428173 |
T |
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| Q |
114 |
agtttggagagtaacgacaaagacaaattaaaaccaattaaaggactgaatacattgaattgaagattacaatagaagaccaatcacagtgcaagatcaa |
213 |
Q |
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| T |
16428174 |
agtttgcagagtaacgacaaagacaaattaaaaccaattaaaggattgaatacattgaattgaagattacaatagaagaccaatcacagtgcaagatcaa |
16428273 |
T |
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| Q |
214 |
gacatttacctaagaa-taagatacgactttgt |
245 |
Q |
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| T |
16428274 |
gacatttacctaagaattaagatacgactttgt |
16428306 |
T |
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