View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16754_low_5 (Length: 532)

Name: NF16754_low_5
Description: NF16754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16754_low_5
NF16754_low_5
[»] chr6 (10 HSPs)
chr6 (14-259)||(17159600-17159845)
chr6 (135-259)||(17163630-17163754)
chr6 (91-258)||(21417089-21417254)
chr6 (169-264)||(7888223-7888319)
chr6 (411-515)||(22274050-22274154)
chr6 (411-515)||(22278816-22278920)
chr6 (392-495)||(21816499-21816600)
chr6 (61-123)||(7888148-7888210)
chr6 (167-249)||(17096337-17096418)
chr6 (167-249)||(17895786-17895868)
[»] chr2 (6 HSPs)
chr2 (51-259)||(29767943-29768151)
chr2 (76-251)||(26440385-26440559)
chr2 (373-515)||(38053156-38053296)
chr2 (170-255)||(27403696-27403781)
chr2 (373-492)||(38055377-38055494)
chr2 (373-495)||(30703223-30703343)
[»] chr4 (5 HSPs)
chr4 (71-249)||(45976135-45976313)
chr4 (61-259)||(33334182-33334366)
chr4 (167-249)||(10317126-10317207)
chr4 (167-249)||(53722020-53722101)
chr4 (172-249)||(43683731-43683807)
[»] chr5 (4 HSPs)
chr5 (14-180)||(33823955-33824124)
chr5 (155-242)||(43384972-43385058)
chr5 (167-249)||(30695306-30695387)
chr5 (109-141)||(34224379-34224411)
[»] chr8 (13 HSPs)
chr8 (71-249)||(41949815-41949992)
chr8 (390-515)||(20772499-20772622)
chr8 (390-515)||(20782293-20782416)
chr8 (391-515)||(20806427-20806549)
chr8 (375-494)||(20769571-20769688)
chr8 (375-494)||(20779365-20779482)
chr8 (71-180)||(41945408-41945517)
chr8 (391-514)||(20835340-20835461)
chr8 (391-514)||(20850209-20850330)
chr8 (167-249)||(33071931-33072012)
chr8 (167-249)||(42234757-42234838)
chr8 (391-495)||(20842129-20842231)
chr8 (167-249)||(28644575-28644656)
[»] scaffold0006 (6 HSPs)
scaffold0006 (391-495)||(113413-113515)
scaffold0006 (371-495)||(174566-174688)
scaffold0006 (371-495)||(189974-190096)
scaffold0006 (392-485)||(142490-142580)
scaffold0006 (395-495)||(210322-210420)
scaffold0006 (391-495)||(118186-118288)
[»] chr1 (14 HSPs)
chr1 (371-495)||(13676984-13677106)
chr1 (391-514)||(20485813-20485934)
chr1 (390-495)||(13516631-13516734)
chr1 (371-495)||(13595823-13595945)
chr1 (410-516)||(16454409-16454515)
chr1 (391-495)||(20377296-20377398)
chr1 (391-495)||(20511183-20511285)
chr1 (373-515)||(13552090-13552230)
chr1 (410-496)||(16492517-16492603)
chr1 (392-485)||(13652729-13652819)
chr1 (416-515)||(15896392-15896491)
chr1 (437-515)||(16463567-16463645)
chr1 (169-249)||(43591886-43591965)
chr1 (167-249)||(16588541-16588622)
[»] scaffold0460 (2 HSPs)
scaffold0460 (391-514)||(6802-6923)
scaffold0460 (391-514)||(11367-11488)
[»] chr3 (2 HSPs)
chr3 (35-259)||(53352915-53353129)
chr3 (167-196)||(755895-755924)
[»] scaffold0069 (2 HSPs)
scaffold0069 (391-495)||(47598-47700)
scaffold0069 (391-515)||(41922-42044)
[»] scaffold0068 (1 HSPs)
scaffold0068 (391-480)||(34600-34687)
[»] chr7 (5 HSPs)
chr7 (185-255)||(2962637-2962706)
chr7 (167-256)||(13828165-13828254)
chr7 (171-249)||(8674977-8675054)
chr7 (14-67)||(2962360-2962413)
chr7 (167-249)||(47419641-47419722)
[»] scaffold0012 (1 HSPs)
scaffold0012 (395-495)||(120197-120295)


Alignment Details
Target: chr6 (Bit Score: 174; Significance: 2e-93; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 14 - 259
Target Start/End: Complemental strand, 17159845 - 17159600
Alignment:
Q  14 agagagaaagataatgaattaaggaatgtaaaatgtctattgactcttatgaaaagttgtacaaggaatgagcttaaatacaagcaagtgttatgttact 113  Q
    |||||||||||||||||||| ||||||||||||||| |||||| | | ||||||| |||||||||||||||||||| |||| ||||||||||||||||||    
T  17159845 agagagaaagataatgaattgaggaatgtaaaatgtatattgattgtaatgaaaatttgtacaaggaatgagcttatatacgagcaagtgttatgttact 17159746  T
Q  114 tgaagcacaagtaagcaacaactctaactcttatttcctaaaacttctaacttacttgtaacaaacttcaaaacaaactaaaataaagtgtaatcaatca 213  Q
    ||||||||||||||| ||||||||| ||||||||||||||||| |||||||  ||||||||||||| |||||||||||||||| ||||| | ||||||||    
T  17159745 tgaagcacaagtaagtaacaactctgactcttatttcctaaaatttctaaccaacttgtaacaaacgtcaaaacaaactaaaacaaagtatgatcaatca 17159646  T
Q  214 actaatcatgattaccactaatctaaacttgaattatcaactaaac 259  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  17159645 actaatcatgattatcactaatctaaacttgaattatcaactaaac 17159600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 135 - 259
Target Start/End: Complemental strand, 17163754 - 17163630
Alignment:
Q  135 ctctaactcttatttcctaaaacttctaacttacttgtaacaaacttcaaaacaaactaaaataaagtgtaatcaatcaactaatcatgattaccactaa 234  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||| | ||||||    
T  17163754 ctctaactcttatttcctaaaacttctaaccaacttgtaacaaacttcaaaacaaactaaaacaaagtgtgatcaatcaactaatcacgatcatcactaa 17163655  T
Q  235 tctaaacttgaattatcaactaaac 259  Q
    |||||||||||||||||||||||||    
T  17163654 tctaaacttgaattatcaactaaac 17163630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 91 - 258
Target Start/End: Original strand, 21417089 - 21417254
Alignment:
Q  91 atacaagcaagtgttatgttacttgaagcacaagtaagcaacaactctaactcttatttcctaaaacttctaacttacttgtaacaaacttcaaaacaaa 190  Q
    |||||| | |||| |||||||||||||||||||||||| |||| || |||| |||||||| |||| ||| ||||  ||||||||||||||||||||| ||    
T  21417089 atacaaactagtgctatgttacttgaagcacaagtaagtaacagctataacccttatttcttaaagcttgtaaccaacttgtaacaaacttcaaaac-aa 21417187  T
Q  191 ctaaaataaagtgtaatcaatcaactaatcatgattaccactaatctaaacttgaattatcaactaaa 258  Q
    |||||| |||||||||||||||| ||||| |||||||  ||||| || ||||||||||||||||||||    
T  21417188 ctaaaacaaagtgtaatcaatcagctaattatgattaatactaaact-aacttgaattatcaactaaa 21417254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 169 - 264
Target Start/End: Original strand, 7888223 - 7888319
Alignment:
Q  169 ttgtaacaaacttcaaaacaaactaaaat-aaagtgtaatcaatcaactaatcatgattaccactaatctaaacttgaattatcaactaaacaaaga 264  Q
    ||||||||||||||||||||||||||||| ||||||| || |||||||||| |||||||| ||||||| ||||||||||||| ||||||||| ||||    
T  7888223 ttgtaacaaacttcaaaacaaactaaaatcaaagtgtgattaatcaactaaacatgattatcactaatgtaaacttgaattaacaactaaactaaga 7888319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 411 - 515
Target Start/End: Complemental strand, 22274154 - 22274050
Alignment:
Q  411 aggtgggatttggtagtttgaagaagttaaaactatctgaatatcccgagttaaaagaattatggtatggtcaacttcagcataatctacttaagagttt 510  Q
    |||||| |||||||||||| ||| | |||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||   | ||| ||||||    
T  22274154 aggtggcatttggtagtttcaagcatttaaaactatctgaatatcccgagttaaaagagttgtggtatggtcatcttcagcataacacatttaggagttt 22274055  T
Q  511 gaagt 515  Q
    |||||    
T  22274054 gaagt 22274050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 411 - 515
Target Start/End: Complemental strand, 22278920 - 22278816
Alignment:
Q  411 aggtgggatttggtagtttgaagaagttaaaactatctgaatatcccgagttaaaagaattatggtatggtcaacttcagcataatctacttaagagttt 510  Q
    |||||| |||||||||||| ||| | |||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||   | ||| ||||||    
T  22278920 aggtggcatttggtagtttcaagcatttaaaactatctgaatatcccgagttaaaagagttgtggtatggtcatcttcagcataacacatttaggagttt 22278821  T
Q  511 gaagt 515  Q
    |||||    
T  22278820 gaagt 22278816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 392 - 495
Target Start/End: Original strand, 21816499 - 21816600
Alignment:
Q  392 aatacaattgttttcatataggtgggatttggtagtttgaagaagttaaaactatctgaatatcccgagttaaaagaattatggtatggtcaacttcagc 491  Q
    ||||||||||||||  || || |||||||||||||||| ||| | |||| ||||||||||||||||||||||||||| || |||||||||| |||| |||    
T  21816499 aatacaattgtttt--tacagctgggatttggtagtttcaagcatttaatactatctgaatatcccgagttaaaagagttgtggtatggtcgacttgagc 21816596  T
Q  492 ataa 495  Q
    ||||    
T  21816597 ataa 21816600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 61 - 123
Target Start/End: Original strand, 7888148 - 7888210
Alignment:
Q  61 tatgaaaagttgtacaaggaatgagcttaaatacaagcaagtgttatgttacttgaagcacaa 123  Q
    |||||||| |||||||||||||||||||| ||||||||| |||||| ||||||||||||||||    
T  7888148 tatgaaaaattgtacaaggaatgagcttatatacaagcatgtgttaggttacttgaagcacaa 7888210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 167 - 249
Target Start/End: Original strand, 17096337 - 17096418
Alignment:
Q  167 acttgtaacaaacttcaaaacaaactaaaataaagtgtaatcaatcaactaatcatgattaccactaatctaaacttgaatta 249  Q
    ||||||||||||||||| |||||||||||| ||| ||| || |||| ||| ||  |||||| |||||| ||||||||||||||    
T  17096337 acttgtaacaaacttcataacaaactaaaacaaaatgtgattaatc-actgattgtgattatcactaaactaaacttgaatta 17096418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 249
Target Start/End: Original strand, 17895786 - 17895868
Alignment:
Q  167 acttgtaacaaacttcaaaacaaactaaaataaagtgtaatcaatcaactaatcatgattaccact-aatctaaacttgaatta 249  Q
    ||||||||||||||||| |||||||||||||||| ||| || |||| ||| ||  |||||| |||| || ||||||||||||||    
T  17895786 acttgtaacaaacttcagaacaaactaaaataaaatgtgattaatc-actgattgtgattatcactaaaactaaacttgaatta 17895868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 145; Significance: 4e-76; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 51 - 259
Target Start/End: Complemental strand, 29768151 - 29767943
Alignment:
Q  51 tattgactcttatgaaaagttgtacaaggaatgagcttaaatacaagcaagtgttatgttacttgaagcacaagtaagcaacaactctaactcttatttc 150  Q
    |||||| ||| | ||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  29768151 tattgattctaaggaaaatttgtacaaggaatgagcttatatacaagcaattgttatgttacttgaagcacaagtaagtaacaactctaactcttatttc 29768052  T
Q  151 ctaaaacttctaacttacttgtaacaaacttcaaaacaaactaaaataaagtgtaatcaatcaactaatcatgattaccactaatctaaacttgaattat 250  Q
    ||||||||| ||||  ||||||||||||||| |||||||||||||| ||||||| ||||||||| |||||||||||| |||||| |||||||||||||||    
T  29768051 ctaaaacttataaccaacttgtaacaaactttaaaacaaactaaaacaaagtgtgatcaatcaattaatcatgattatcactaaactaaacttgaattat 29767952  T
Q  251 caactaaac 259  Q
    |||||||||    
T  29767951 caactaaac 29767943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 76 - 251
Target Start/End: Complemental strand, 26440559 - 26440385
Alignment:
Q  76 aaggaatgagcttaaatacaagcaagtgttatgttacttgaagcacaagtaagcaacaactctaactcttatttcctaaaacttctaacttacttgtaac 175  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||| || ||||||||  ||||| ||||||||  |||||||||    
T  26440559 aaggaatgagcttatatacaagcaagtgttatgttacttgaagcacaagtaagtaactactttagctcttattcgctaaagcttctaaccaacttgtaac 26440460  T
Q  176 aaacttcaaaacaaactaaaataaagtgtaatcaatcaactaatcatgattaccactaatctaaacttgaattatc 251  Q
     ||||| |||||||||||||||||| ||| ||||||||| ||||||||||||  ||||| ||||| ||||||||||    
T  26440459 -aactttaaaacaaactaaaataaaatgtgatcaatcaaataatcatgattattactaaactaaatttgaattatc 26440385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 373 - 515
Target Start/End: Complemental strand, 38053296 - 38053156
Alignment:
Q  373 tttgtttgaaataacatgcaatacaattgttttcatataggtgggatttggtagtttgaagaagttaaaactatctgaatatcccgagttaaaagaatta 472  Q
    ||||| |||| ||||||| ||||||||||||||  |  ||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||| ||     
T  38053296 tttgtgtgaactaacatgaaatacaattgtttt--tgcaggtgggatttggtagtttcaagcatttaaaactatctgaatatcccgagttaaaagagttg 38053199  T
Q  473 tggtatggtcaacttcagcataatctacttaagagtttgaagt 515  Q
    |||||||||| |||| || ||||   | ||| |||||||||||    
T  38053198 tggtatggtcgacttgagtataaagcatttaggagtttgaagt 38053156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 170 - 255
Target Start/End: Original strand, 27403696 - 27403781
Alignment:
Q  170 tgtaacaaacttcaaaacaaactaaaataaagtgtaatcaat-caactaatcatgattaccactaatctaaacttgaattatcaact 255  Q
    ||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||| |||||| || |||||||||||||||||    
T  27403696 tgtaacaaacttcaaaacaaactaaaacaaagtgtaatcaatccagctaatcatgattaacactaaact-aacttgaattatcaact 27403781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 373 - 492
Target Start/End: Complemental strand, 38055494 - 38055377
Alignment:
Q  373 tttgtttgaaataacatgcaatacaattgttttcatataggtgggatttggtagtttgaagaagttaaaactatctgaatatcccgagttaaaagaatta 472  Q
    ||||||| || ||||  ||||||||||||||||  ||||||||| |||||||||||| ||| | || || |||||||||||||||||||||||||| ||     
T  38055494 tttgtttaaactaactcgcaatacaattgtttt--tataggtggcatttggtagtttcaagcattttaacctatctgaatatcccgagttaaaagacttg 38055397  T
Q  473 tggtatggtcaacttcagca 492  Q
    ||||||||||| ||| ||||    
T  38055396 tggtatggtcagcttgagca 38055377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 373 - 495
Target Start/End: Complemental strand, 30703343 - 30703223
Alignment:
Q  373 tttgtttgaaataacatgcaatacaattgttttcatataggtgggatttggtagtttgaagaagttaaaactatctgaatatcccgagttaaaagaatta 472  Q
    ||||||| || |||| |||||||| ||||||||  |  ||||||||||||||||||| | | | |||||||||| | | |||||||| ||||||||| |     
T  30703343 tttgtttaaactaacttgcaatacgattgtttt--tgcaggtgggatttggtagtttcaggcatttaaaactattttattatcccgacttaaaagaagtg 30703246  T
Q  473 tggtatggtcaacttcagcataa 495  Q
    ||||||||| | ||| |||||||    
T  30703245 tggtatggtaatcttgagcataa 30703223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 104; Significance: 1e-51; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 71 - 249
Target Start/End: Original strand, 45976135 - 45976313
Alignment:
Q  71 tgtacaaggaatgagcttaaatacaagcaagtgttatgttacttgaagcacaagtaa-gcaacaactctaactcttatttcctaaaacttctaacttact 169  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| | |||||| ||||||||||||| |||||||| ||||   |||    
T  45976135 tgtacaaggaatgagcttatatacaagcaagtgttaggttacttgaagcacaagtaaagtaacaaccctaactcttattttctaaaact-ctaaaaaact 45976233  T
Q  170 tgtaacaaacttcaaaacaaactaaaataaagtgtaatcaatcaactaatcatgattaccactaatctaaacttgaatta 249  Q
    ||||||||||||||||||||||||||| ||  ||| || |||||||||| |||||||||||||||| |||||||||||||    
T  45976234 tgtaacaaacttcaaaacaaactaaaacaagatgtgattaatcaactaagcatgattaccactaatgtaaacttgaatta 45976313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 61 - 259
Target Start/End: Original strand, 33334182 - 33334366
Alignment:
Q  61 tatgaaaagttgtacaaggaatgagcttaaatacaagcaagtgttatgttacttgaagcacaagt-aagcaacaactctaactcttatttcctaaaactt 159  Q
    |||||||| ||||||||||||||| |||| | ||||||| |||||| |||||||||||||||||| ||| |||||| ||||||||||||| |||||   |    
T  33334182 tatgaaaa-ttgtacaaggaatgaacttata-acaagcatgtgttaggttacttgaagcacaagtaaagtaacaaccctaactcttattttctaaa--ct 33334277  T
Q  160 ctaacttacttgtaacaaacttcaaaacaaactaaaat-aaagtgtaatcaatcaactaatcatgattaccactaatctaaacttgaattatcaactaaa 258  Q
    |||||  ||||||            ||||||||||||| ||||||| || |||||||||| |||||||| ||||||| ||||||||||||| ||||||||    
T  33334278 ctaaccaacttgt------------aacaaactaaaatcaaagtgtgattaatcaactaaacatgattatcactaatgtaaacttgaattaacaactaaa 33334365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 167 - 249
Target Start/End: Original strand, 10317126 - 10317207
Alignment:
Q  167 acttgtaacaaacttcaaaacaaactaaaataaagtgtaatcaatcaactaatcatgattaccactaatctaaacttgaatta 249  Q
    ||||||||||||||||| ||||||||| || ||||||| || |||| ||| ||  ||||||  ||||| ||||||||||||||    
T  10317126 acttgtaacaaacttcataacaaactacaacaaagtgtgattaatc-actgattgtgattataactaaactaaacttgaatta 10317207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 167 - 249
Target Start/End: Complemental strand, 53722101 - 53722020
Alignment:
Q  167 acttgtaacaaacttcaaaacaaactaaaataaagtgtaatcaatcaactaatcatgattaccactaatctaaacttgaatta 249  Q
    ||||||||||||||||| |||||||||||| ||| ||| || || | ||| ||  |||||| |||||| ||||||||||||||    
T  53722101 acttgtaacaaacttcataacaaactaaaacaaaatgtgattaa-ccactgattgtgattatcactaaactaaacttgaatta 53722020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 249
Target Start/End: Original strand, 43683731 - 43683807
Alignment:
Q  172 taacaaacttcaaaacaaactaaaataaagtgtaatcaatcaactaatcatgattaccactaatctaaacttgaatta 249  Q
    |||||||||||| |||||||||||| ||||||| || |||| ||| ||  |||||| ||||||  |||||||||||||    
T  43683731 taacaaacttcataacaaactaaaacaaagtgtgattaatc-actgattgtgattatcactaaaataaacttgaatta 43683807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 7e-35; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 14 - 180
Target Start/End: Complemental strand, 33824124 - 33823955
Alignment:
Q  14 agagagaaagataatgaattaaggaatgtaaaatgtct-attgactcttatgaaaagttgtacaaggaatgagcttaaatacaagcaagtgttatgttac 112  Q
    |||||||||||||||||||| ||||||||||||||  | || || |||  ||| || |||||||||||||||||||| ||||||||||||||||||||||    
T  33824124 agagagaaagataatgaattgaggaatgtaaaatgcattatagattctattgagaa-ttgtacaaggaatgagcttatatacaagcaagtgttatgttac 33824026  T
Q  113 ttgaagcacaagt-aagcaacaa--ctctaactcttatttcctaaaacttctaacttacttgtaacaaact 180  Q
    |||||||| |||| ||| |||||  || |||||||||||| ||||||||||||||  ||||||||||||||    
T  33824025 ttgaagcagaagtaaagtaacaaccctataactcttattttctaaaacttctaaccaacttgtaacaaact 33823955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 242
Target Start/End: Complemental strand, 43385058 - 43384972
Alignment:
Q  155 aacttctaacttacttgtaacaaacttcaaaacaaactaaaataaagtgtaatcaatcaactaatcatgattaccactaatctaaact 242  Q
    ||||||||||  ||||||||||||||||| ||||||||||||  || ||| || || | |||||| ||||||| |||||| |||||||    
T  43385058 aacttctaacaaacttgtaacaaacttcataacaaactaaaagcaaatgtgattaa-ccactaattatgattatcactaaactaaact 43384972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 167 - 249
Target Start/End: Complemental strand, 30695387 - 30695306
Alignment:
Q  167 acttgtaacaaacttcaaaacaaactaaaataaagtgtaatcaatcaactaatcatgattaccactaatctaaacttgaatta 249  Q
    ||||||||||||||||| |||||||||||| ||| ||| || || | ||| ||  |||||| |||||| ||||||||||||||    
T  30695387 acttgtaacaaacttcataacaaactaaaacaaaatgtgattaa-ccactgattgtgattatcactaaactaaacttgaatta 30695306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 109 - 141
Target Start/End: Original strand, 34224379 - 34224411
Alignment:
Q  109 ttacttgaagcacaagtaagcaacaactctaac 141  Q
    |||||||||||||||||||| ||||||||||||    
T  34224379 ttacttgaagcacaagtaagtaacaactctaac 34224411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 3e-34; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 71 - 249
Target Start/End: Complemental strand, 41949992 - 41949815
Alignment:
Q  71 tgtacaaggaatgagcttaaatacaagcaagtgttatgttacttgaagcacaagtaagcaacaactctaactcttatttcctaaaacttctaacttactt 170  Q
    ||||||| ||||| | ||| |||||| | |||||||||| |||||||||||||||||| ||||||| |||| |||||||| |||||||| ||||  ||||    
T  41949992 tgtacaatgaatgggtttatatacaaactagtgttatgtcacttgaagcacaagtaagtaacaactataacccttatttcttaaaacttgtaaccaactt 41949893  T
Q  171 gtaacaaacttcaaaacaaactaaaataaagtgtaatcaatcaactaatcatgattaccactaatctaaacttgaatta 249  Q
    |||||||||||||||||||||||||| | ||||| || |||| ||| ||  |||||| |||||| |||| |||||||||    
T  41949892 gtaacaaacttcaaaacaaactaaaacagagtgtgattaatc-actgattgtgattatcactaaactaagcttgaatta 41949815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 390 - 515
Target Start/End: Complemental strand, 20772622 - 20772499
Alignment:
Q  390 gcaatacaattgttttcatataggtgggatttggtagtttgaagaagttaaaactatctgaatatcccgagttaaaagaattatggtatggtcaacttca 489  Q
    |||||||||||||||||| |  |||||||||||||||||| ||| | |||||||||||||||||||||||||||||||| || |||||||||| |||| |    
T  20772622 gcaatacaattgttttcaca--ggtgggatttggtagtttcaagcatttaaaactatctgaatatcccgagttaaaagagttgtggtatggtcgacttga 20772525  T
Q  490 gcataatctacttaagagtttgaagt 515  Q
    | ||||   | ||| |||||||||||    
T  20772524 gaataacacatttaggagtttgaagt 20772499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 390 - 515
Target Start/End: Complemental strand, 20782416 - 20782293
Alignment:
Q  390 gcaatacaattgttttcatataggtgggatttggtagtttgaagaagttaaaactatctgaatatcccgagttaaaagaattatggtatggtcaacttca 489  Q
    |||||||||||||||||| |  |||||||||||||||||| ||| | |||||||||||||||||||||||||||||||| || |||||||||| |||| |    
T  20782416 gcaatacaattgttttcaca--ggtgggatttggtagtttcaagcatttaaaactatctgaatatcccgagttaaaagagttgtggtatggtcgacttga 20782319  T
Q  490 gcataatctacttaagagtttgaagt 515  Q
    | ||||   | ||| |||||||||||    
T  20782318 gaataacacatttaggagtttgaagt 20782293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 391 - 515
Target Start/End: Complemental strand, 20806549 - 20806427
Alignment:
Q  391 caatacaattgttttcatataggtgggatttggtagtttgaagaagttaaaactatctgaatatcccgagttaaaagaattatggtatggtcaacttcag 490  Q
    ||||||||||||||| | |  |||||||||||||||||| ||| | |||||||||||||||||||||||||||||||| || |||||||||| |||| ||    
T  20806549 caatacaattgttttaaca--ggtgggatttggtagtttcaagcatttaaaactatctgaatatcccgagttaaaagagttgtggtatggtcgacttgag 20806452  T
Q  491 cataatctacttaagagtttgaagt 515  Q
    |||||   | ||| |||||||||||    
T  20806451 cataaagcatttaggagtttgaagt 20806427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 375 - 494
Target Start/End: Complemental strand, 20769688 - 20769571
Alignment:
Q  375 tgtttgaaataacatgcaatacaattgttttcatataggtgggatttggtagtttgaagaagttaaaactatctgaatatcccgagttaaaagaattatg 474  Q
    |||||||| ||||  ||||||||||||||||  || |||||| |||||||||||| ||| | |||||||||||||||||||||||| |||||||||| ||    
T  20769688 tgtttgaactaactcgcaatacaattgtttt--tacaggtggcatttggtagtttcaagcatttaaaactatctgaatatcccgagctaaaagaattgtg 20769591  T
Q  475 gtatggtcaacttcagcata 494  Q
    ||||||| | ||| ||||||    
T  20769590 gtatggtaatcttgagcata 20769571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 375 - 494
Target Start/End: Complemental strand, 20779482 - 20779365
Alignment:
Q  375 tgtttgaaataacatgcaatacaattgttttcatataggtgggatttggtagtttgaagaagttaaaactatctgaatatcccgagttaaaagaattatg 474  Q
    |||||||| ||||  ||||||||||||||||  || |||||| |||||||||||| ||| | |||||||||||||||||||||||| |||||||||| ||    
T  20779482 tgtttgaactaactcgcaatacaattgtttt--tacaggtggcatttggtagtttcaagcatttaaaactatctgaatatcccgagctaaaagaattgtg 20779385  T
Q  475 gtatggtcaacttcagcata 494  Q
    ||||||| | ||| ||||||    
T  20779384 gtatggtaatcttgagcata 20779365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 71 - 180
Target Start/End: Complemental strand, 41945517 - 41945408
Alignment:
Q  71 tgtacaaggaatgagcttaaatacaagcaagtgttatgttacttgaagcacaagtaagcaacaactctaactcttatttcctaaaacttctaacttactt 170  Q
    ||||||| ||||| | ||| |||||| | | ||||||||||||| ||||||||||||| ||||||| ||||||||||||| |||||||| ||||  ||||    
T  41945517 tgtacaatgaatgggtttatatacaaacgaatgttatgttactttaagcacaagtaagtaacaactataactcttatttcttaaaacttgtaaccaactt 41945418  T
Q  171 gtaacaaact 180  Q
    ||||||||||    
T  41945417 gtaacaaact 41945408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 391 - 514
Target Start/End: Complemental strand, 20835461 - 20835340
Alignment:
Q  391 caatacaattgttttcatataggtgggatttggtagtttgaagaagttaaaactatctgaatatcccgagttaaaagaattatggtatggtcaacttcag 490  Q
    ||||||||| ||||||| |  |||||||||||||||||| ||| | ||||||||||||||||||||| |||||||| | || ||||| ||||||||| ||    
T  20835461 caatacaatagttttcaca--ggtgggatttggtagtttcaagcatttaaaactatctgaatatcccaagttaaaaaagttctggtacggtcaacttgag 20835364  T
Q  491 cataatctacttaagagtttgaag 514  Q
    ||||||  | ||| ||||||||||    
T  20835363 cataatgcatttaggagtttgaag 20835340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 391 - 514
Target Start/End: Complemental strand, 20850330 - 20850209
Alignment:
Q  391 caatacaattgttttcatataggtgggatttggtagtttgaagaagttaaaactatctgaatatcccgagttaaaagaattatggtatggtcaacttcag 490  Q
    ||||||||||||||| | |  ||||||||||||||| || ||| | |||||||||||||||||||| || |||||||| || |||||||||| |||| ||    
T  20850330 caatacaattgttttaaca--ggtgggatttggtagattcaagcatttaaaactatctgaatatcctgatttaaaagagttctggtatggtcgacttgag 20850233  T
Q  491 cataatctacttaagagtttgaag 514  Q
    |||||  || ||| ||||||||||    
T  20850232 cataacgtatttaggagtttgaag 20850209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 167 - 249
Target Start/End: Complemental strand, 33072012 - 33071931
Alignment:
Q  167 acttgtaacaaacttcaaaacaaactaaaataaagtgtaatcaatcaactaatcatgattaccactaatctaaacttgaatta 249  Q
    ||||||||||||||||| |||||||||||| ||||||| || |||| ||| ||  |||||| |||||| ||||||||||||||    
T  33072012 acttgtaacaaacttcataacaaactaaaagaaagtgtgattaatc-actgattgtgattatcactaaactaaacttgaatta 33071931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 167 - 249
Target Start/End: Original strand, 42234757 - 42234838
Alignment:
Q  167 acttgtaacaaacttcaaaacaaactaaaataaagtgtaatcaatcaactaatcatgattaccactaatctaaacttgaatta 249  Q
    ||||||||||||||||| |||||||||||| ||||||| || |||| ||| ||  |||||| |||||| ||||||||||||||    
T  42234757 acttgtaacaaacttcataacaaactaaaacaaagtgtgattaatc-actgattgtgattatcactaaactaaacttgaatta 42234838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 391 - 495
Target Start/End: Complemental strand, 20842231 - 20842129
Alignment:
Q  391 caatacaattgttttcatataggtgggatttggtagtttgaagaagttaaaactatctgaatatcccgagttaaaagaattatggtatggtcaacttcag 490  Q
    ||||||||||||||| | |  |||||||||||||||||| ||| | |||||||| ||||||||||| ||  | ||||| || |||||||||| |||| ||    
T  20842231 caatacaattgttttaaca--ggtgggatttggtagtttcaagcatttaaaactgtctgaatatcctgaccttaaagagttctggtatggtcgacttgag 20842134  T
Q  491 cataa 495  Q
    |||||    
T  20842133 cataa 20842129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 167 - 249
Target Start/End: Complemental strand, 28644656 - 28644575
Alignment:
Q  167 acttgtaacaaacttcaaaacaaactaaaataaagtgtaatcaatcaactaatcatgattaccactaatctaaacttgaatta 249  Q
    ||||||||||||||||| |||||||||||| ||| ||| || || | ||| ||  |||||| |||||| ||||||||||||||    
T  28644656 acttgtaacaaacttcataacaaactaaaacaaaatgtgattaa-ccactgattgtgattatcactaaactaaacttgaatta 28644575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 66; Significance: 6e-29; HSPs: 6)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 391 - 495
Target Start/End: Original strand, 113413 - 113515
Alignment:
Q  391 caatacaattgttttcatataggtgggatttggtagtttgaagaagttaaaactatctgaatatcccgagttaaaagaattatggtatggtcaacttcag 490  Q
    ||||||||||||||||| |  |||||||||||||||||| ||| | |||||||||||||||||||||||||||||||| || ||||||||||||||| ||    
T  113413 caatacaattgttttcaca--ggtgggatttggtagtttcaagcatttaaaactatctgaatatcccgagttaaaagagttctggtatggtcaacttgag 113510  T
Q  491 cataa 495  Q
    |||||    
T  113511 cataa 113515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 371 - 495
Target Start/End: Original strand, 174566 - 174688
Alignment:
Q  371 catttgtttgaaataacatgcaatacaattgttttcatataggtgggatttggtagtttgaagaagttaaaactatctgaatatcccgagttaaaagaat 470  Q
    |||||||||||| ||||| || |||||||||||||  |  ||||||||||||||||||| ||| | ||||||||| |||||||||||||| |||||||||    
T  174566 catttgtttgaattaacacgcgatacaattgtttt--tgcaggtgggatttggtagtttcaagcatttaaaactaactgaatatcccgagctaaaagaat 174663  T
Q  471 tatggtatggtcaacttcagcataa 495  Q
    | ||||||||||||||| |||||||    
T  174664 tgtggtatggtcaacttgagcataa 174688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 371 - 495
Target Start/End: Original strand, 189974 - 190096
Alignment:
Q  371 catttgtttgaaataacatgcaatacaattgttttcatataggtgggatttggtagtttgaagaagttaaaactatctgaatatcccgagttaaaagaat 470  Q
    |||||||||||| ||||| || |||||||||||||  |  ||||||||||||||||||| ||| | ||||||||| |||||||||||||| |||||||||    
T  189974 catttgtttgaattaacacgcgatacaattgtttt--tgcaggtgggatttggtagtttcaagcatttaaaactaactgaatatcccgagctaaaagaat 190071  T
Q  471 tatggtatggtcaacttcagcataa 495  Q
    | ||||||||||||||| |||||||    
T  190072 tgtggtatggtcaacttgagcataa 190096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 392 - 485
Target Start/End: Original strand, 142490 - 142580
Alignment:
Q  392 aatacaattgttttcatataggtgggatttggtagtttgaagaagttaaaactatctgaatatcccgagttaaaagaattatggtatggtcaac 485  Q
    ||||||||||||||   | |||||||||||| |||||| ||| | ||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  142490 aatacaattgtttt---acaggtgggatttgttagtttcaagcatttacaactatctgaatatcccgagttaaaagaattgtggtatggtcaac 142580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 395 - 495
Target Start/End: Original strand, 210322 - 210420
Alignment:
Q  395 acaattgttttcatataggtgggatttggtagtttgaagaagttaaaactatctgaatatcccgagttaaaagaattatggtatggtcaacttcagcata 494  Q
    ||||||||||||| |  |||||||||| |||||||  || | |||||||||||||||||||||||||||||||| || |||||||| |||||| ||||||    
T  210322 acaattgttttcaca--ggtgggattttgtagtttcgagcatttaaaactatctgaatatcccgagttaaaagagttctggtatggccaacttgagcata 210419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 391 - 495
Target Start/End: Original strand, 118186 - 118288
Alignment:
Q  391 caatacaattgttttcatataggtgggatttggtagtttgaagaagttaaaactatctgaatatcccgagttaaaagaattatggtatggtcaacttcag 490  Q
    ||||||||||||||| | |  |||||||||||||||||| ||| | |||||||| ||||||||||| ||  | ||||| || |||||||||| |||| ||    
T  118186 caatacaattgttttaaca--ggtgggatttggtagtttcaagcatttaaaactgtctgaatatcctgaccttaaagagttctggtatggtcgacttgag 118283  T
Q  491 cataa 495  Q
    |||||    
T  118284 cataa 118288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 6e-29; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 371 - 495
Target Start/End: Original strand, 13676984 - 13677106
Alignment:
Q  371 catttgtttgaaataacatgcaatacaattgttttcatataggtgggatttggtagtttgaagaagttaaaactatctgaatatcccgagttaaaagaat 470  Q
    |||||||||||| ||||| || |||||||||||||  |  ||||||||||||||||||| ||| | ||||||||| |||||||||||||| |||||||||    
T  13676984 catttgtttgaattaacacgcgatacaattgtttt--tgcaggtgggatttggtagtttcaagcatttaaaactaactgaatatcccgagctaaaagaat 13677081  T
Q  471 tatggtatggtcaacttcagcataa 495  Q
    | ||||||||||||||| |||||||    
T  13677082 tgtggtatggtcaacttgagcataa 13677106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 391 - 514
Target Start/End: Original strand, 20485813 - 20485934
Alignment:
Q  391 caatacaattgttttcatataggtgggatttggtagtttgaagaagttaaaactatctgaatatcccgagttaaaagaattatggtatggtcaacttcag 490  Q
    |||||||||||||||  || ||||||||||||||||||| ||| | |||||||||||||||||||| ||||||||||| || ||||||||||||||| ||    
T  20485813 caatacaattgtttt--tacaggtgggatttggtagtttcaagcatttaaaactatctgaatatcctgagttaaaagagttctggtatggtcaacttgag 20485910  T
Q  491 cataatctacttaagagtttgaag 514  Q
    |||||   | ||||||||||||||    
T  20485911 cataacgcatttaagagtttgaag 20485934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 390 - 495
Target Start/End: Original strand, 13516631 - 13516734
Alignment:
Q  390 gcaatacaattgttttcatataggtgggatttggtagtttgaagaagttaaaactatctgaatatcccgagttaaaagaattatggtatggtcaacttca 489  Q
    |||||||||||||||||| |  |||||||||||||||||| ||| | |||||||||||||||||||||||||||||||| || |||||||||| |||| |    
T  13516631 gcaatacaattgttttcaca--ggtgggatttggtagtttcaagcatttaaaactatctgaatatcccgagttaaaagagttgtggtatggtcgacttga 13516728  T
Q  490 gcataa 495  Q
    ||||||    
T  13516729 gcataa 13516734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 371 - 495
Target Start/End: Original strand, 13595823 - 13595945
Alignment:
Q  371 catttgtttgaaataacatgcaatacaattgttttcatataggtgggatttggtagtttgaagaagttaaaactatctgaatatcccgagttaaaagaat 470  Q
    |||||||||||| ||||| || |||||||||||||  |  ||||||||||||| ||||| ||| | |||||||||||||||||||||||||||||||| |    
T  13595823 catttgtttgaattaacacgcgatacaattgtttt--tgcaggtgggatttggcagtttcaagcatttaaaactatctgaatatcccgagttaaaagagt 13595920  T
Q  471 tatggtatggtcaacttcagcataa 495  Q
    | |||||||||| |||| |||||||    
T  13595921 tgtggtatggtcgacttgagcataa 13595945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 410 - 516
Target Start/End: Complemental strand, 16454515 - 16454409
Alignment:
Q  410 taggtgggatttggtagtttgaagaagttaaaactatctgaatatcccgagttaaaagaattatggtatggtcaacttcagcataatctacttaagagtt 509  Q
    |||||||  ||||||||||| ||| | |||||||||||||| ||||| |||||||||||||||||||||||| ||||| |||||||| || ||| |||||    
T  16454515 taggtggcctttggtagtttcaagcatttaaaactatctgagtatcctgagttaaaagaattatggtatggtaaacttgagcataatgtatttaggagtt 16454416  T
Q  510 tgaagtg 516  Q
    |||||||    
T  16454415 tgaagtg 16454409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 391 - 495
Target Start/End: Original strand, 20377296 - 20377398
Alignment:
Q  391 caatacaattgttttcatataggtgggatttggtagtttgaagaagttaaaactatctgaatatcccgagttaaaagaattatggtatggtcaacttcag 490  Q
    ||||||||||||||||| |  ||||||||||||| |||| ||| | |||||||||||||||| ||||||||||||||| || ||||||||||||||| ||    
T  20377296 caatacaattgttttcaca--ggtgggatttggtggtttcaagcatttaaaactatctgaatttcccgagttaaaagagttctggtatggtcaacttgag 20377393  T
Q  491 cataa 495  Q
    |||||    
T  20377394 cataa 20377398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 391 - 495
Target Start/End: Complemental strand, 20511285 - 20511183
Alignment:
Q  391 caatacaattgttttcatataggtgggatttggtagtttgaagaagttaaaactatctgaatatcccgagttaaaagaattatggtatggtcaacttcag 490  Q
    ||||||||||||||||| |  ||||||||||||| |||| ||| | |||||||||||||||||||||||||||||||| || ||||| ||||||||| ||    
T  20511285 caatacaattgttttcaca--ggtgggatttggtggtttcaagcatttaaaactatctgaatatcccgagttaaaagagttctggtacggtcaacttgag 20511188  T
Q  491 cataa 495  Q
    |||||    
T  20511187 cataa 20511183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 373 - 515
Target Start/End: Original strand, 13552090 - 13552230
Alignment:
Q  373 tttgtttgaaataacatgcaatacaattgttttcatataggtgggatttggtagtttgaagaagttaaaactatctgaatatcccgagttaaaagaatta 472  Q
    |||||||||| ||||  ||||||||||||||||  || |||||| |||||||||||| ||  | |||||| ||||||||||||||||| ||||||||||     
T  13552090 tttgtttgaactaactcgcaatacaattgtttt--tacaggtggcatttggtagtttcaaacatttaaaattatctgaatatcccgagctaaaagaattg 13552187  T
Q  473 tggtatggtcaacttcagcataatctacttaagagtttgaagt 515  Q
    ||||||||| | ||| |||||||   | |||||||||||||||    
T  13552188 tggtatggtaatcttgagcataacacatttaagagtttgaagt 13552230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 410 - 496
Target Start/End: Complemental strand, 16492603 - 16492517
Alignment:
Q  410 taggtgggatttggtagtttgaagaagttaaaactatctgaatatcccgagttaaaagaattatggtatggtcaacttcagcataat 496  Q
    ||||||| |||||||||||| ||| | ||||||||||||||||||||||| |||||||||||||||||||||| |||  ||||||||    
T  16492603 taggtggcatttggtagtttcaagcatttaaaactatctgaatatcccgaattaaaagaattatggtatggtccactcgagcataat 16492517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 392 - 485
Target Start/End: Original strand, 13652729 - 13652819
Alignment:
Q  392 aatacaattgttttcatataggtgggatttggtagtttgaagaagttaaaactatctgaatatcccgagttaaaagaattatggtatggtcaac 485  Q
    ||||||||||||||   | |||||||||||| |||||| ||| | ||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  13652729 aatacaattgtttt---acaggtgggatttgttagtttcaagcatttacaactatctgaatatcccgagttaaaagaattgtggtatggtcaac 13652819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 416 - 515
Target Start/End: Complemental strand, 15896491 - 15896392
Alignment:
Q  416 ggatttggtagtttgaagaagttaaaactatctgaatatcccgagttaaaagaattatggtatggtcaacttcagcataatctacttaagagtttgaagt 515  Q
    |||||||||||||| ||| | |||||||| ||||| ||||| |||||||||||| | |||||||||||||||||||||||   | ||| |||||||||||    
T  15896491 ggatttggtagtttcaagcatttaaaactttctgattatcctgagttaaaagaaatgtggtatggtcaacttcagcataacacatttaggagtttgaagt 15896392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 437 - 515
Target Start/End: Complemental strand, 16463645 - 16463567
Alignment:
Q  437 ttaaaactatctgaatatcccgagttaaaagaattatggtatggtcaacttcagcataatctacttaagagtttgaagt 515  Q
    |||||||||||||| ||||| ||||||||||||| |||||||||| ||||| |||||||| || ||| |||||||||||    
T  16463645 ttaaaactatctgagtatcctgagttaaaagaatcatggtatggtaaacttgagcataatgtatttaggagtttgaagt 16463567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 169 - 249
Target Start/End: Original strand, 43591886 - 43591965
Alignment:
Q  169 ttgtaacaaacttcaaaacaaactaaaataaagtgtaatcaatcaactaatcatgattaccactaatctaaacttgaatta 249  Q
    ||||||||||||||| |||||||||||||||||||  || |||| ||| ||  |||||| |||||| ||||||||||||||    
T  43591886 ttgtaacaaacttcataacaaactaaaataaagtgcgattaatc-actgattgtgattatcactaaactaaacttgaatta 43591965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 167 - 249
Target Start/End: Original strand, 16588541 - 16588622
Alignment:
Q  167 acttgtaacaaacttcaaaacaaactaaaataaagtgtaatcaatcaactaatcatgattaccactaatctaaacttgaatta 249  Q
    ||||||||||||||||| |||||||||||| ||| ||| || || | ||| ||  |||||| |||||| ||||||||||||||    
T  16588541 acttgtaacaaacttcataacaaactaaaacaaaatgtgattaa-ccacttattgtgattatcactaaactaaacttgaatta 16588622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0460 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: scaffold0460
Description:

Target: scaffold0460; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 391 - 514
Target Start/End: Original strand, 6802 - 6923
Alignment:
Q  391 caatacaattgttttcatataggtgggatttggtagtttgaagaagttaaaactatctgaatatcccgagttaaaagaattatggtatggtcaacttcag 490  Q
    |||||||||||||||  || ||||||||||||||||||| ||| | |||||||||||||||||||| ||||||||||| || ||||||||||||||| ||    
T  6802 caatacaattgtttt--tacaggtgggatttggtagtttcaagcatttaaaactatctgaatatcctgagttaaaagagttctggtatggtcaacttgag 6899  T
Q  491 cataatctacttaagagtttgaag 514  Q
    |||||   | ||||||||||||||    
T  6900 cataacgcatttaagagtttgaag 6923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0460; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 391 - 514
Target Start/End: Original strand, 11367 - 11488
Alignment:
Q  391 caatacaattgttttcatataggtgggatttggtagtttgaagaagttaaaactatctgaatatcccgagttaaaagaattatggtatggtcaacttcag 490  Q
    |||||||||||||||  || ||||||||||||||||||| ||| | |||||||||||||||||||| ||||||||||| || ||||||||||||||| ||    
T  11367 caatacaattgtttt--tacaggtgggatttggtagtttcaagcatttaaaactatctgaatatcctgagttaaaagagttctggtatggtcaacttgag 11464  T
Q  491 cataatctacttaagagtttgaag 514  Q
    |||||   | ||||||||||||||    
T  11465 cataacgcatttaagagtttgaag 11488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 35 - 259
Target Start/End: Original strand, 53352915 - 53353129
Alignment:
Q  35 aggaatgtaaaatgtctattgactcttatgaaaagttgtacaaggaatgagcttaaatacaagcaagtgttat---gttacttgaagcacaagtaagcaa 131  Q
    ||||||||||| ||| |||||| ||||||||||  ||||| || ||||| | ||| |||||| | ||||||||   ||||||||||||||||||||| ||    
T  53352915 aggaatgtaaattgtatattgaatcttatgaaat-ttgtataaagaatgggtttatatacaaactagtgttataatgttacttgaagcacaagtaagtaa 53353013  T
Q  132 caactctaactcttatttcctaaaacttctaacttacttgtaacaaacttcaaaacaaactaaaataaagtgtaatcaatcaactaatcatgattaccac 231  Q
    ||||| |||| |||||| | ||||||||           ||||||||||| |||  ||||||||| ||| |||||||||||| ||||||||||||| |||    
T  53353014 caactataacccttattgcttaaaactt-----------gtaacaaactttaaattaaactaaaacaaaatgtaatcaatcatctaatcatgattaacac 53353102  T
Q  232 taatctaaacttgaattatcaactaaac 259  Q
    |||||| ||||||||||| |||||||||    
T  53353103 taatct-aacttgaattaccaactaaac 53353129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 196
Target Start/End: Complemental strand, 755924 - 755895
Alignment:
Q  167 acttgtaacaaacttcaaaacaaactaaaa 196  Q
    ||||||||||||||||||||||||||||||    
T  755924 acttgtaacaaacttcaaaacaaactaaaa 755895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 391 - 495
Target Start/End: Original strand, 47598 - 47700
Alignment:
Q  391 caatacaattgttttcatataggtgggatttggtagtttgaagaagttaaaactatctgaatatcccgagttaaaagaattatggtatggtcaacttcag 490  Q
    ||||||||||||||||| |  ||||||||||||| |||| ||| | |||||||||||||||| ||||||||||||||| || ||||||||||||||| ||    
T  47598 caatacaattgttttcaca--ggtgggatttggtggtttcaagcatttaaaactatctgaatttcccgagttaaaagagttctggtatggtcaacttgag 47695  T
Q  491 cataa 495  Q
    |||||    
T  47696 cataa 47700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 391 - 515
Target Start/End: Original strand, 41922 - 42044
Alignment:
Q  391 caatacaattgttttcatataggtgggatttggtagtttgaagaagttaaaactatctgaatatcccgagttaaaagaattatggtatggtcaacttcag 490  Q
    ||||||||||||||| | |  |||||||||||||||||| ||| | |||||||||||||||||||| ||  | |||||||| |||||||||| |||| ||    
T  41922 caatacaattgttttaaca--ggtgggatttggtagtttcaagcatttaaaactatctgaatatcctgaccttaaagaattctggtatggtcgacttgag 42019  T
Q  491 cataatctacttaagagtttgaagt 515  Q
    |||||   | ||| |||||||||||    
T  42020 cataaagcatttaggagtttgaagt 42044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 391 - 480
Target Start/End: Complemental strand, 34687 - 34600
Alignment:
Q  391 caatacaattgttttcatataggtgggatttggtagtttgaagaagttaaaactatctgaatatcccgagttaaaagaattatggtatgg 480  Q
    ||||||||||||||| | |  ||||||||||||| |||| ||| | |||||||||||||||||||||||||||||||| || ||||||||    
T  34687 caatacaattgttttaaca--ggtgggatttggtggtttcaagcatttaaaactatctgaatatcccgagttaaaagagttgtggtatgg 34600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 185 - 255
Target Start/End: Original strand, 2962637 - 2962706
Alignment:
Q  185 aacaaactaaaataaagtgtaatcaatcaactaatcatgattaccactaatctaaacttgaattatcaact 255  Q
    |||||||||||| ||||||||||||||||  |||||||||||| ||||||||| |||||||||||||||||    
T  2962637 aacaaactaaaacaaagtgtaatcaatcagttaatcatgattaacactaatct-aacttgaattatcaact 2962706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 167 - 256
Target Start/End: Original strand, 13828165 - 13828254
Alignment:
Q  167 acttgtaacaaacttcaaaacaaactaaaataaagtgtaatcaatcaactaatcatgattaccactaatctaaacttgaattatcaacta 256  Q
    ||||||||||||||||| ||||||| |||  ||| ||| || || ||||||| |||||||| ||||||  ||||||||||||| ||||||    
T  13828165 acttgtaacaaacttcagaacaaacaaaatgaaaatgtgattaaccaactaaacatgattatcactaaggtaaacttgaattaacaacta 13828254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 171 - 249
Target Start/End: Complemental strand, 8675054 - 8674977
Alignment:
Q  171 gtaacaaacttcaaaacaaactaaaataaagtgtaatcaatcaactaatcatgattaccactaatctaaacttgaatta 249  Q
    ||||||||||||||||||||||||  | |||||| || || ||  ||| |||||||| |||||||||||||||||||||    
T  8675054 gtaacaaacttcaaaacaaactaac-tgaagtgtgattaaccatttaaacatgattatcactaatctaaacttgaatta 8674977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 2962360 - 2962413
Alignment:
Q  14 agagagaaagataatgaattaaggaatgtaaaatgtctattgactcttatgaaa 67  Q
    |||||||||||||||||||| | ||| ||||||||| |||||| ||||||||||    
T  2962360 agagagaaagataatgaattgatgaaagtaaaatgtatattgattcttatgaaa 2962413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 167 - 249
Target Start/End: Original strand, 47419641 - 47419722
Alignment:
Q  167 acttgtaacaaacttcaaaacaaactaaaataaagtgtaatcaatcaactaatcatgattaccactaatctaaacttgaatta 249  Q
    ||||||||||||||||| |||||||||||| ||| ||| || || | ||| ||  |||||| |||||| ||||||||||||||    
T  47419641 acttgtaacaaacttcataacaaactaaaacaaaatgtgattaa-ccactgattgtgattatcactaaactaaacttgaatta 47419722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 395 - 495
Target Start/End: Original strand, 120197 - 120295
Alignment:
Q  395 acaattgttttcatataggtgggatttggtagtttgaagaagttaaaactatctgaatatcccgagttaaaagaattatggtatggtcaacttcagcata 494  Q
    ||||||||||||| |  |||||||||| |||||||  || | |||||||||| ||||||||||||||||||||| || |||||||| |||||| ||||||    
T  120197 acaattgttttcaca--ggtgggattttgtagtttcgagcatttaaaactatttgaatatcccgagttaaaagagttctggtatggccaacttgagcata 120294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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