View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16754_low_51 (Length: 256)

Name: NF16754_low_51
Description: NF16754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16754_low_51
NF16754_low_51
[»] chr7 (13 HSPs)
chr7 (17-245)||(39537092-39537320)
chr7 (21-245)||(39354396-39354620)
chr7 (19-243)||(39366997-39367219)
chr7 (24-245)||(39563200-39563429)
chr7 (21-188)||(39339555-39339722)
chr7 (21-188)||(1083978-1084143)
chr7 (24-206)||(39546593-39546773)
chr7 (48-154)||(39588386-39588492)
chr7 (17-155)||(39573907-39574045)
chr7 (22-154)||(39621241-39621373)
chr7 (213-245)||(1083714-1083746)
chr7 (130-159)||(39339727-39339756)
chr7 (201-245)||(39339755-39339799)
[»] chr1 (1 HSPs)
chr1 (33-76)||(2159901-2159944)
[»] chr4 (1 HSPs)
chr4 (22-86)||(2896424-2896488)
[»] chr2 (2 HSPs)
chr2 (43-83)||(44210194-44210234)
chr2 (43-83)||(44233215-44233255)


Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 17 - 245
Target Start/End: Complemental strand, 39537320 - 39537092
Alignment:
Q  17 aatacaaggtgttagcaagattaaatacggttataatccagcaacatggatgttggaagtcacaacttcatctaaagaaagggaattggggattgatttt 116  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  39537320 aataaaaggtgttagcaagattaaatacggttataatccagcaacatggatgttggaagtcaccacttcatctaaagaaagggaattggggattgatttt 39537221  T
Q  117 gcagaggtgtacaaaaattcagagttatacaggtattttcactggtatgcacaatctaatcaaactatagaaatggaaaataatctactacaactgtttc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39537220 gcagaggtgtacaaaaattcagagttatacaggtattttcactggtatgcacaatctaatcaaactatagaaatggaaaataatctactacaactgtttc 39537121  T
Q  217 aggagaaacaaagcacttatcaaagaatt 245  Q
    |||||||||||||||||||||||||||||    
T  39537120 aggagaaacaaagcacttatcaaagaatt 39537092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 21 - 245
Target Start/End: Original strand, 39354396 - 39354620
Alignment:
Q  21 caaggtgttagcaagattaaatacggttataatccagcaacatggatgttggaagtcacaacttcatctaaagaaagggaattggggattgattttgcag 120  Q
    ||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39354396 caaggtgttagaaagatcaaagacggttataatccagcaacatggatgttggaagtcacaacttcatctaaagaaagggaattggggattgattttgcag 39354495  T
Q  121 aggtgtacaaaaattcagagttatacaggtattttcactggtatgcacaatctaatcaaactatagaaatggaaaataatctactacaactgtttcagga 220  Q
    || ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  39354496 agttgtacaaaaattcagagttatacaggtattttcactggtacccacaatctaatcaaactatagaaatggaaaataatctactataattgtttcagga 39354595  T
Q  221 gaaacaaagcacttatcaaagaatt 245  Q
     ||||||||||||| ||||||||||    
T  39354596 taaacaaagcacttgtcaaagaatt 39354620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 19 - 243
Target Start/End: Original strand, 39366997 - 39367219
Alignment:
Q  19 tacaaggtgttagcaagattaaatacggttataatccagcaacatggatgttggaagtcacaacttcatctaaagaaagggaattggggattgattttgc 118  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||| ||  ||||||||| |||    
T  39366997 tacaaggtgttagcaagattaaagacggttataatccagcaacatggatgttggaagtcacaacttcatccaaagaagtggagttacggattgattatgc 39367096  T
Q  119 agaggtgtacaaaaattcagagttatacaggtattttcactggtatgcacaatctaatcaaactatagaaatggaaaataatctactacaactgtttcag 218  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||   |||| ||||||| ||||||| | |||||||||||||||||||||||||||    
T  39367097 agaggtgtacaaaaattcagagttatacaggtattttcacttgtatg--aaatcaaatcaaattatagaactagaaaataatctactacaactgtttcag 39367194  T
Q  219 gagaaacaaagcacttatcaaagaa 243  Q
    |||||||||||||||||||||||||    
T  39367195 gagaaacaaagcacttatcaaagaa 39367219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 24 - 245
Target Start/End: Complemental strand, 39563429 - 39563200
Alignment:
Q  24 ggtgttagcaagattaaatacggttataatccagcaacatggatgttggaagtcacaacttcatctaaagaaagggaattggggattgattttgcagagg 123  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  39563429 ggtgttagcaagattaaagacggttataatccagcaacatggatgttggaagtcacaacttcatcaaaagaaagggaattggggattgattttgcagagg 39563330  T
Q  124 tgtacaaaaattcagagttatacaggtattttcactggtatgca--------caatctaatcaaactatagaaatggaaaataatctactacaactgttt 215  Q
    ||||| |||||||||||||||||||||||||||||| ||||| |         |||| |||||||||||||||   ||||||||||||||| ||||||||    
T  39563329 tgtaccaaaattcagagttatacaggtattttcacttgtatgaaatcaaatcaaatcaaatcaaactatagaatcagaaaataatctactataactgttt 39563230  T
Q  216 caggagaaacaaagcacttatcaaagaatt 245  Q
     |||||||||||||||||||||||||||||    
T  39563229 taggagaaacaaagcacttatcaaagaatt 39563200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 21 - 188
Target Start/End: Original strand, 39339555 - 39339722
Alignment:
Q  21 caaggtgttagcaagattaaatacggttataatccagcaacatggatgttggaagtcacaacttcatctaaagaaagggaattggggattgattttgcag 120  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||||||| ||    
T  39339555 caaggtgttagcaagatcaaagacggttataatccagcaacatggatgttggaagtcacaaattcatctaaagaagtggaattggggattgattttgtag 39339654  T
Q  121 aggtgtacaaaaattcagagttatacaggtattttcactggtatgcacaatctaatcaaactatagaa 188  Q
    || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  39339655 agttgtacaaaaattcagagttatacaggtattttcactggtatacacaatctaatcaaactatagaa 39339722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 21 - 188
Target Start/End: Complemental strand, 1084143 - 1083978
Alignment:
Q  21 caaggtgttagcaagattaaatacggttataatccagcaacatggatgttggaagtcacaacttcatctaaagaaagggaattggggattgattttgcag 120  Q
    |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||  |||||| ||||||||||||||||    
T  1084143 caaggtgttaccaagattaaagacggttataatccagcaacatggatgttggaagtcacagcttcatctaaggaagtggaattagggattgattttgcag 1084044  T
Q  121 aggtgtacaaaaattcagagttatacaggtattttcactggtatgcacaatctaatcaaactatagaa 188  Q
    ||||||||||||| ||| |||||||||||||||||| || |||||  |||||||||||||||||||||    
T  1084043 aggtgtacaaaaactcacagttatacaggtattttcccttgtatg--caatctaatcaaactatagaa 1083978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 24 - 206
Target Start/End: Complemental strand, 39546773 - 39546593
Alignment:
Q  24 ggtgttagcaagattaaatacggttataatccagcaacatggatgttggaagtcacaacttcatctaaagaaagggaattggggattgattttgcagagg 123  Q
    ||||||| |||||| ||| | |||||||||||||||||||||||||||||| |||||| |||||||||||||   || ||||||||||||||||||||||    
T  39546773 ggtgttaacaagatcaaagagggttataatccagcaacatggatgttggaaatcacaaattcatctaaagaagtagatttggggattgattttgcagagg 39546674  T
Q  124 tgtacaaaaattcagagttatacaggtattttcactggtatgcacaatctaatcaaactatagaaatggaaaataatctacta 206  Q
    |||||||||||||||| |||||||||||||||||||  |||  | |||||||||||||||||||||| |||||||||| ||||    
T  39546673 tgtacaaaaattcagatttatacaggtattttcact--tatatataatctaatcaaactatagaaatcgaaaataatcaacta 39546593  T

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Target: chr7; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 48 - 154
Target Start/End: Complemental strand, 39588492 - 39588386
Alignment:
Q  48 tataatccagcaacatggatgttggaagtcacaacttcatctaaagaaagggaattggggattgattttgcagaggtgtacaaaaattcagagttataca 147  Q
    |||||||||||||| ||||| ||||||||||| |||||||||||||||   ||||| ||| |||||||||| |||||||||| |||||||   |||||||    
T  39588492 tataatccagcaacttggattttggaagtcactacttcatctaaagaattagaattaggggttgattttgctgaggtgtacataaattcaacattataca 39588393  T
Q  148 ggtattt 154  Q
    |||||||    
T  39588392 ggtattt 39588386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 155
Target Start/End: Complemental strand, 39574045 - 39573907
Alignment:
Q  17 aatacaaggtgttagcaagattaaatacggttataatccagcaacatggatgttggaagtcacaacttcatctaaagaaagggaattggggattgatttt 116  Q
    |||||||||||| || ||| ||||| | || || ||||||||||| |||||||||||||| || |  ||| | ||||||| |||| ||| |||| |||||    
T  39574045 aatacaaggtgtcagtaagcttaaagatggctacaatccagcaacttggatgttggaagttactagctcagcaaaagaaatggaaatggagattaatttt 39573946  T
Q  117 gcagaggtgtacaaaaattcagagttatacaggtatttt 155  Q
    || |||||||||||||  ||||| || ||||||||||||    
T  39573945 gctgaggtgtacaaaagctcagaattgtacaggtatttt 39573907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 154
Target Start/End: Complemental strand, 39621373 - 39621241
Alignment:
Q  22 aaggtgttagcaagattaaatacggttataatccagcaacatggatgttggaagtcacaacttcatctaaagaaagggaattggggattgattttgcaga 121  Q
    ||||||| || |||||| || | |||| ||| |||||| | |||||||||||| | ||  |||||   ||||||| | |||||| |||||||||| | ||    
T  39621373 aaggtgtcagtaagattgaagatggttgtaacccagcagcttggatgttggaaattacttcttcagaaaaagaaatgcaattggagattgatttttctga 39621274  T
Q  122 ggtgtacaaaaattcagagttatacaggtattt 154  Q
     ||||||||||||||||| ||||||||||||||    
T  39621273 agtgtacaaaaattcagaattatacaggtattt 39621241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 245
Target Start/End: Complemental strand, 1083746 - 1083714
Alignment:
Q  213 tttcaggagaaacaaagcacttatcaaagaatt 245  Q
    |||||||||||||||||||||||||||||||||    
T  1083746 tttcaggagaaacaaagcacttatcaaagaatt 1083714  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 159
Target Start/End: Original strand, 39339727 - 39339756
Alignment:
Q  130 aaaattcagagttatacaggtattttcact 159  Q
    ||||||||||||||||||||||||||||||    
T  39339727 aaaattcagagttatacaggtattttcact 39339756  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 245
Target Start/End: Original strand, 39339755 - 39339799
Alignment:
Q  201 ctactacaactgtttcaggagaaacaaagcacttatcaaagaatt 245  Q
    |||||| || |||||||||| |||||||||||||||||| |||||    
T  39339755 ctactataattgtttcaggataaacaaagcacttatcaaggaatt 39339799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 2159944 - 2159901
Alignment:
Q  33 aagattaaatacggttataatccagcaacatggatgttggaagt 76  Q
    ||||||||| | ||||||||||| ||||||||||||||||||||    
T  2159944 aagattaaagatggttataatcctgcaacatggatgttggaagt 2159901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 2896488 - 2896424
Alignment:
Q  22 aaggtgttagcaagattaaatacggttataatccagcaacatggatgttggaagtcacaacttca 86  Q
    |||| ||||| || |||||| | || |||||||||||||| |||||||||||||| |||| ||||    
T  2896488 aaggggttagtaaaattaaagatggctataatccagcaacttggatgttggaagttacaagttca 2896424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 83
Target Start/End: Complemental strand, 44210234 - 44210194
Alignment:
Q  43 acggttataatccagcaacatggatgttggaagtcacaact 83  Q
    |||| ||||| ||||||||||||||||||||||| ||||||    
T  44210234 acggatataacccagcaacatggatgttggaagttacaact 44210194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 83
Target Start/End: Complemental strand, 44233255 - 44233215
Alignment:
Q  43 acggttataatccagcaacatggatgttggaagtcacaact 83  Q
    |||| ||||| ||||||||||||||||||||||| ||||||    
T  44233255 acggatataacccagcaacatggatgttggaagttacaact 44233215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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