View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16754_low_54 (Length: 238)
Name: NF16754_low_54
Description: NF16754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16754_low_54 |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 25249681 - 25249903
Alignment:
| Q |
1 |
tggatcatgacaaatatgttgtggtacgttagaaataaattggcatgttgagggaatagattaaaaatatattagctagtattcccatagaatctttgta |
100 |
Q |
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| T |
25249681 |
tggatcatgacaaatatgttgtggtacgttagaaataaattggcatgttgagggaatagattaaaaatatattagctagtattcccatagaatctttgta |
25249780 |
T |
|
| Q |
101 |
gtagttttatttctacgtagacaaaaagtttatatcggacaaaaataattaaccggcaaagaaaataactcgactac--ttgattatttaagctaatatt |
198 |
Q |
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|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||| |
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| T |
25249781 |
gtagttttctttctacgtaaacaaaaagtttatatcggacaaaaataattaaccggcaatgaaaataactctactacaattgattatttaagctaatatt |
25249880 |
T |
|
| Q |
199 |
tattgatattttaaaagtatatt |
221 |
Q |
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||||||||||||||||||||||| |
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| T |
25249881 |
tattgatattttaaaagtatatt |
25249903 |
T |
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