View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16754_low_57 (Length: 222)
Name: NF16754_low_57
Description: NF16754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16754_low_57 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 151; Significance: 5e-80; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 48 - 206
Target Start/End: Original strand, 30761538 - 30761696
Alignment:
| Q |
48 |
tctaagagtgtccctccatagatgaaccttatcaaattcatatttgaaagtgctagaaaacatcttacatgtcttcaaattgtcctcaggatacaagtcg |
147 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
30761538 |
tctaagagtgtccctccaaagatgaaccttatcaaattcatatttgaaagtgctagaaaacatcttacatgtcttcaaattgttctcaggatacaagtcg |
30761637 |
T |
|
| Q |
148 |
tgtttgtattcattaggcttctcaaacacctccttaaaaacactcattgcttccttcat |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30761638 |
tgtttgtattcattaggcttctcaaacacctccttaaaaacactcattgcttccttcat |
30761696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 51 - 206
Target Start/End: Original strand, 30749332 - 30749487
Alignment:
| Q |
51 |
aagagtgtccctccatagatgaaccttatcaaattcatatttgaaagtgctagaaaacatcttacatgtcttcaaattgtcctcaggatacaagtcgtgt |
150 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||||||||| || ||||||||||||||||| |||||||||||| | |||||||||||||||||||| |
|
|
| T |
30749332 |
aagagagtccctccatagatgaaccttatcacattcatatttcaaggtgctagaaaacatcttgcatgtcttcaaaatctcctcaggatacaagtcgtgc |
30749431 |
T |
|
| Q |
151 |
ttgtattcattaggcttctcaaacacctccttaaaaacactcattgcttccttcat |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||||||| ||||||||| |
|
|
| T |
30749432 |
ttgtattcattaggcttctcaaacacctccttgaaaatactcattgtttccttcat |
30749487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 51 - 206
Target Start/End: Original strand, 30770783 - 30770938
Alignment:
| Q |
51 |
aagagtgtccctccatagatgaaccttatcaaattcatatttgaaagtgctagaaaacatcttacatgtcttcaaattgtcctcaggatacaagtcgtgt |
150 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||||||||| || ||||||||||||||||| |||||||||||| | |||||||||||||||||||| |
|
|
| T |
30770783 |
aagagagtccctccatagatgaaccttatcacattcatatttcaaggtgctagaaaacatcttgcatgtcttcaaaatctcctcaggatacaagtcgtgc |
30770882 |
T |
|
| Q |
151 |
ttgtattcattaggcttctcaaacacctccttaaaaacactcattgcttccttcat |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||||||| ||||||||| |
|
|
| T |
30770883 |
ttgtattcattaggcttctcaaacacctccttgaaaatactcattgtttccttcat |
30770938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 48 - 206
Target Start/End: Original strand, 30784073 - 30784231
Alignment:
| Q |
48 |
tctaagagtgtccctccatagatgaaccttatcaaattcatatttgaaagtgctagaaaacatcttacatgtcttcaaattgtcctcaggatacaagtcg |
147 |
Q |
| |
|
||||||| | |||||||||| ||||||||| ||| ||||||| | | | |||||| |||| || ||||||||||||||| || | || ||||| || |
|
|
| T |
30784073 |
tctaagactatccctccataaatgaaccttttcagtttcatatctaagactgctagtaaacttcctacatgtcttcaaatcatcattagcatacatgttt |
30784172 |
T |
|
| Q |
148 |
tgtttgtattcattaggcttctcaaacacctccttaaaaacactcattgcttccttcat |
206 |
Q |
| |
|
|| ||||| ||||||||| |||||||||||||||| ||||||||||||| ||| ||||| |
|
|
| T |
30784173 |
tgcttgtactcattaggcatctcaaacacctccttgaaaacactcattgtttctttcat |
30784231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 48 - 206
Target Start/End: Original strand, 30741683 - 30741841
Alignment:
| Q |
48 |
tctaagagtgtccctccatagatgaaccttatcaaattcatatttgaaagtgctagaaaacatcttacatgtcttcaaattgtcctcaggatacaagtcg |
147 |
Q |
| |
|
||||||| | |||||||||| ||||||||| ||| ||||||| | | | | |||| ||| ||||||||||||||||||| || ||| |||| |||| |
|
|
| T |
30741683 |
tctaagactatccctccataaatgaaccttttcactttcatatcttagactactagtaaatatcttacatgtcttcaaatcatcatcaagatataagttt |
30741782 |
T |
|
| Q |
148 |
tgtttgtattcattaggcttctcaaacacctccttaaaaacactcattgcttccttcat |
206 |
Q |
| |
|
| |||||||||| | || |||||||||||||||| |||| |||||||| ||||||||| |
|
|
| T |
30741783 |
ttcttgtattcataacgcatctcaaacacctccttgaaaatactcattgtttccttcat |
30741841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University