View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16754_low_6 (Length: 530)
Name: NF16754_low_6
Description: NF16754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16754_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 20 - 518
Target Start/End: Complemental strand, 51552217 - 51551719
Alignment:
| Q |
20 |
ttcaagtcaggtgtttttgaagaaagttttttcatgtcagcttcactaagttgatcaatagaggtagctaaatcatccttagcgtattgaatcatctctt |
119 |
Q |
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| T |
51552217 |
ttcaagtcaggtgtttttgaagcaagttttttcatgtcagcttcactaagttgatcaatagaggtagctaaatcatccttagcgtattgaatcatctctt |
51552118 |
T |
|
| Q |
120 |
tacaatcctcaaatgcagctttctcttctttagtgttaaatttgaatgaatttgttttgttgaaggctttgttaacctcatcctctacagttttaagata |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51552117 |
tacaatcctcaaatgcagctttctcttctttagtgttaaatttgaatgaatttgttttgttgaaggctttgttaacctcatcctctacagttttaagata |
51552018 |
T |
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| Q |
220 |
aactttgagaaggtctttagggtgttgaagtttaggatccttttccactgctttgttaagaggtccttcacatttttctttgtaatctgcagaactgcat |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51552017 |
aactttgagaaggtctttagggtgttgaagtttaggatccttttccactgctttgttaagaggtccttcacatttttctttgtaatctgcagaactgcat |
51551918 |
T |
|
| Q |
320 |
accaatttcactaccttttctgaatgtgcaacatgtttgctaccattagcggttgaagtgtcttctggatgattnnnnnnnnnnnnnnnnnnnaaaggat |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||| |
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| T |
51551917 |
accaatttcactaccttttctgaatgtgcaacatgtttgctaccattagcggttgaactgtcttctggatgactaccaccaccaccaccaccaaaaggat |
51551818 |
T |
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| Q |
420 |
tgtattttgtggtagcaacaaagaatgcacaacctatgagaccgacgaagacaacggaagaaataactccaatgatgatccttttcctcatctgtgctc |
518 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
51551817 |
tgtattttgtggtagcaacaaagaatgcacaacctatgagaccgacgaagacaacggaagaaataactccaatgatgatccttttcctcatttgtgctc |
51551719 |
T |
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