View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16754_low_7 (Length: 528)

Name: NF16754_low_7
Description: NF16754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16754_low_7
NF16754_low_7
[»] chr5 (2 HSPs)
chr5 (17-511)||(13036818-13037344)
chr5 (17-511)||(13106825-13107352)
[»] chr8 (4 HSPs)
chr8 (1-44)||(5548000-5548043)
chr8 (1-40)||(15589800-15589839)
chr8 (16-44)||(17074888-17074916)
chr8 (16-44)||(17573354-17573382)
[»] chr7 (2 HSPs)
chr7 (1-44)||(44434325-44434368)
chr7 (15-44)||(18201507-18201536)
[»] chr2 (3 HSPs)
chr2 (1-44)||(31026036-31026079)
chr2 (1-45)||(30504375-30504419)
chr2 (1-45)||(38396671-38396715)
[»] chr6 (2 HSPs)
chr6 (1-43)||(12730446-12730488)
chr6 (12-44)||(33274393-33274425)


Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-150; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 17 - 511
Target Start/End: Original strand, 13036818 - 13037344
Alignment:
Q  17 aatggtcgacacgtgacacctc--acttaaat-atatgtgtgagcaatacatccagtt----ccgggacgatcttgccacataatacactcttggaaaga 109  Q
    ||||||||||| ||||||||||  ||||||   ||||||||||||||||||| |||||    |  |||||||||||||||||||||||||||||||||||    
T  13036818 aatggtcgacatgtgacacctctcacttaagggatatgtgtgagcaatacatgcagttgttcctcggacgatcttgccacataatacactcttggaaaga 13036917  T
Q  110 gatgaagaactaatggttca-------agcattcatgacaagataagtctcattgcgagataatgcatctttnnnnnnnnnnnnnnnnntgcatcttttt 202  Q
    ||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||                 |||||||||||    
T  13036918 gatgaagaactaatggttcatggttcaagcattcatgacaagataagtctcattgcgagataatgcatctttgaaacaaaagcaaaaaatgcatcttttt 13037017  T
Q  203 t---aactagttccacttcc-accggggatgtgtctttatcaaattctccatcaattatgtgcatcttaatttgttcaccacttcttctctacaagtact 298  Q
    |   |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     | ||||    
T  13037018 ttttaactagttccacttcccaccggggatgtgtctttatcaaattctccatcaattatgtgcatcttaatttgttcaccacttcttct-----actact 13037112  T
Q  299 atatttggggattaaaaagggttggaagtaagaaacttaatgtgcttcttttt-cccctcaaaacatatattctctaatg------------------ga 379  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |                   |    
T  13037113 atatttggggattaaaaagggttggaagtaagaaacttaatgtacttctttttccccctcaaaacatatattctctaaagtaattactccttctatgata 13037212  T
Q  380 taaacacttgtttatttatggaattgcattccctaagagtcaagaatgaataagtaaaggtatgtggccaaaatctcataatgctgtgagaaggactttg 479  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13037213 taaacacttgtttatttatggaattgcattccctaagagtcaagaatgaataagtaaaggtatgtggccaaaatctcataatgctgtgagaaggactttg 13037312  T
Q  480 agggtaatcaaccagcacatagggtcacttat 511  Q
    ||||||||||||||||||||||||||||||||    
T  13037313 agggtaatcaaccagcacatagggtcacttat 13037344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 17 - 511
Target Start/End: Original strand, 13106825 - 13107352
Alignment:
Q  17 aatggtcgacacgtgacacctc--acttaaat-atatgtgtgagcaatacatccagtt----ccgggacgatcttgccacataatacactcttggaaaga 109  Q
    ||||||||||| ||||||||||  ||||||   ||||||||||||||||||| |||||    |  |||||||||||||||||||||||||||||||||||    
T  13106825 aatggtcgacatgtgacacctctcacttaagggatatgtgtgagcaatacatgcagttgttcctcggacgatcttgccacataatacactcttggaaaga 13106924  T
Q  110 gatgaagaactaatggttca-------agcattcatgacaagataagtctcattgcgagataatgcatctttnnnnnnnnnnnnnnnnntgcatcttttt 202  Q
    ||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||                 |||||||||||    
T  13106925 gatgaagaactaatggttcatggttcaagcattcatgacaagataagtctcattgcgagataatgcatctttgaaacaaaagcaaaaaatgcatcttttt 13107024  T
Q  203 t----aactagttccacttcc-accggggatgtgtctttatcaaattctccatcaattatgtgcatcttaatttgttcaccacttcttctctacaagtac 297  Q
    |    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     | |||    
T  13107025 tttttaactagttccacttcccaccggggatgtgtctttatcaaattctccatcaattatgtgcatcttaatttgttcaccacttcttct-----actac 13107119  T
Q  298 tatatttggggattaaaaagggttggaagtaagaaacttaatgtgcttcttttt-cccctcaaaacatatattctctaatg------------------g 378  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |                       
T  13107120 tatatttggggattaaaaagggttggaagtaagaaacttaatgtacttctttttccccctcaaaacatatattctctaaagtaattactccttctatgat 13107219  T
Q  379 ataaacacttgtttatttatggaattgcattccctaagagtcaagaatgaataagtaaaggtatgtggccaaaatctcataatgctgtgagaaggacttt 478  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13107220 ataaacacttgtttatttatggaattgcattccctaagagtcaagaatgaataagtaaaggtatgtggccaaaatctcataatgctgtgagaaggacttt 13107319  T
Q  479 gagggtaatcaaccagcacatagggtcacttat 511  Q
    |||||||||||||||||||||||||||||||||    
T  13107320 gagggtaatcaaccagcacatagggtcacttat 13107352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 5548000 - 5548043
Alignment:
Q  1 ctgacgtgactcctacaatggtcgacacgtgacacctcacttaa 44  Q
    |||||||||| || ||||||||||||||||| ||||||||||||    
T  5548000 ctgacgtgacacccacaatggtcgacacgtggcacctcacttaa 5548043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 15589839 - 15589800
Alignment:
Q  1 ctgacgtgactcctacaatggtcgacacgtgacacctcac 40  Q
    |||||||||| |||||||||||||||||||| ||||||||    
T  15589839 ctgacgtgacacctacaatggtcgacacgtggcacctcac 15589800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 44
Target Start/End: Original strand, 17074888 - 17074916
Alignment:
Q  16 caatggtcgacacgtgacacctcacttaa 44  Q
    |||||||||||||||||||||||||||||    
T  17074888 caatggtcgacacgtgacacctcacttaa 17074916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 44
Target Start/End: Complemental strand, 17573382 - 17573354
Alignment:
Q  16 caatggtcgacacgtgacacctcacttaa 44  Q
    |||||||||||||||||||||||||||||    
T  17573382 caatggtcgacacgtgacacctcacttaa 17573354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 44434325 - 44434368
Alignment:
Q  1 ctgacgtgactcctacaatggtcgacacgtgacacctcacttaa 44  Q
    |||||||||| || ||||||||||||||||| ||||||||||||    
T  44434325 ctgacgtgacacccacaatggtcgacacgtggcacctcacttaa 44434368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 44
Target Start/End: Original strand, 18201507 - 18201536
Alignment:
Q  15 acaatggtcgacacgtgacacctcacttaa 44  Q
    ||||||||||||||||||||||||||||||    
T  18201507 acaatggtcgacacgtgacacctcacttaa 18201536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 31026079 - 31026036
Alignment:
Q  1 ctgacgtgactcctacaatggtcgacacgtgacacctcacttaa 44  Q
    |||||||||| || ||||||||||||||||| ||||||||||||    
T  31026079 ctgacgtgacacccacaatggtcgacacgtggcacctcacttaa 31026036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 30504375 - 30504419
Alignment:
Q  1 ctgacgtgactcctacaatggtcgacacgtgacacctcacttaaa 45  Q
    |||| ||||| || ||||||||||||||||| |||||||||||||    
T  30504375 ctgaggtgacacccacaatggtcgacacgtggcacctcacttaaa 30504419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 38396715 - 38396671
Alignment:
Q  1 ctgacgtgactcctacaatggtcgacacgtgacacctcacttaaa 45  Q
    ||||||||||  | |||||| ||||||||||||||||||||||||    
T  38396715 ctgacgtgacatccacaatgatcgacacgtgacacctcacttaaa 38396671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 12730446 - 12730488
Alignment:
Q  1 ctgacgtgactcctacaatggtcgacacgtgacacctcactta 43  Q
    |||||||| | || |||||||||||||||||||||||||||||    
T  12730446 ctgacgtggcacccacaatggtcgacacgtgacacctcactta 12730488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 12 - 44
Target Start/End: Complemental strand, 33274425 - 33274393
Alignment:
Q  12 cctacaatggtcgacacgtgacacctcacttaa 44  Q
    |||||||||||||||||||| ||||||||||||    
T  33274425 cctacaatggtcgacacgtggcacctcacttaa 33274393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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