View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16755_high_11 (Length: 351)

Name: NF16755_high_11
Description: NF16755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16755_high_11
NF16755_high_11
[»] chr2 (4 HSPs)
chr2 (258-334)||(42367931-42368007)
chr2 (1-47)||(42368217-42368263)
chr2 (258-305)||(9261862-9261909)
chr2 (1-47)||(36422630-36422676)
[»] chr1 (2 HSPs)
chr1 (258-328)||(33941700-33941770)
chr1 (258-305)||(29000217-29000264)
[»] chr4 (2 HSPs)
chr4 (258-305)||(44664015-44664062)
chr4 (1-41)||(44664242-44664282)
[»] chr7 (1 HSPs)
chr7 (1-41)||(18670419-18670459)


Alignment Details
Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 258 - 334
Target Start/End: Complemental strand, 42368007 - 42367931
Alignment:
Q  258 tctagaattgaaacacaccaattcatcaatttcttcctccattgaaaagcaagttcagccataaacaaagcaagttc 334  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42368007 tctagaattgaaacacaccaattcatcaatttcttcctccattgaaaagcaagttcagccataaacaaagcaagttc 42367931  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 42368263 - 42368217
Alignment:
Q  1 attgtaggtccactgtatataacagtgaaccacctgtatcttatttt 47  Q
    |||||| |||||||||||||||||||||||||||||||||| |||||    
T  42368263 attgtaagtccactgtatataacagtgaaccacctgtatctaatttt 42368217  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 258 - 305
Target Start/End: Original strand, 9261862 - 9261909
Alignment:
Q  258 tctagaattgaaacacaccaattcatcaatttcttcctccattgaaaa 305  Q
    |||| ||||||||||||  |||||||||||||||||||||||||||||    
T  9261862 tctaaaattgaaacacaataattcatcaatttcttcctccattgaaaa 9261909  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 36422676 - 36422630
Alignment:
Q  1 attgtaggtccactgtatataacagtgaaccacctgtatcttatttt 47  Q
    |||||||||||||||||||||| ||||||||||| |||||| |||||    
T  36422676 attgtaggtccactgtatataatagtgaaccaccggtatctaatttt 36422630  T

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Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 258 - 328
Target Start/End: Original strand, 33941700 - 33941770
Alignment:
Q  258 tctagaattgaaacacaccaattcatcaatttcttcctccattgaaaagcaagttcagccataaacaaagc 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  33941700 tctagaattgaaacacaccaattcatcaatttcttcctccattgaaaagaaagttcagccataaacaaagc 33941770  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 258 - 305
Target Start/End: Original strand, 29000217 - 29000264
Alignment:
Q  258 tctagaattgaaacacaccaattcatcaatttcttcctccattgaaaa 305  Q
    ||||||||||||||||| ||||||||  |||||||||| |||||||||    
T  29000217 tctagaattgaaacacaacaattcattgatttcttccttcattgaaaa 29000264  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 258 - 305
Target Start/End: Complemental strand, 44664062 - 44664015
Alignment:
Q  258 tctagaattgaaacacaccaattcatcaatttcttcctccattgaaaa 305  Q
    ||||||||||||||||| ||||||||  |||||||||| |||||||||    
T  44664062 tctagaattgaaacacaacaattcattgatttcttccttcattgaaaa 44664015  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 44664282 - 44664242
Alignment:
Q  1 attgtaggtccactgtatataacagtgaaccacctgtatct 41  Q
    |||| |||||||| || ||||||||||||||||||||||||    
T  44664282 attgcaggtccaccgtgtataacagtgaaccacctgtatct 44664242  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 18670459 - 18670419
Alignment:
Q  1 attgtaggtccactgtatataacagtgaaccacctgtatct 41  Q
    |||| |||||||| || ||||||||||||||||||||||||    
T  18670459 attgcaggtccaccgtgtataacagtgaaccacctgtatct 18670419  T

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