View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16755_high_16 (Length: 328)
Name: NF16755_high_16
Description: NF16755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16755_high_16 |
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| [»] scaffold0137 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 9821512 - 9821809
Alignment:
| Q |
1 |
catttttgtgtatccatttcaaagacggatgacaataagaaataagataaagaagaagaacgaacaccgcatttttgtgcatccatttctgaccaaattt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
9821512 |
catttttgtgtatccatttcaaagacggatgacaataagaaataagataaagaagaagaacgaacaccacatttttgtgcatccatttctgaccaaattt |
9821611 |
T |
|
| Q |
101 |
aattacgtcttgggggagagcatctcttcaattcatcatcaatgagtatcttacaaagcgatacaagggttacaagtaataagccttcaacaataaaccc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |
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| T |
9821612 |
aattacgtcttgggggagagcatctcttcaattcatcatcaatgagtatcttacaaagcaatacaagggttacaagtaataagcctttaacaataaaccc |
9821711 |
T |
|
| Q |
201 |
taatttctaccttgttctcaatctcttctcttaaataggaaactcaatgatttcattctccaagatgtttagaataattcaaaatccaagagtctacc |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |
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| T |
9821712 |
taatttctaccttgttctcaatctcttctcttaaataggaaactcaatgatttcattctccaaggtgtttagaataattcaaaatccaagagtgtacc |
9821809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 116 - 211
Target Start/End: Original strand, 38860405 - 38860500
Alignment:
| Q |
116 |
gagagcatctcttcaattcatcatcaatgagtatcttacaaagcgatacaagggttacaagtaataagccttcaacaataaaccctaatttctacc |
211 |
Q |
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| T |
38860405 |
gagagcagctctccaatccactatcaaatagtttcttacaaagagatacaatagttataagaaattagccttcaacaataaaccctaatttctacc |
38860500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 1e-50; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 58 - 298
Target Start/End: Original strand, 38984662 - 38984902
Alignment:
| Q |
58 |
gaacgaacaccgcatttttgtgcatccatttctgaccaaatttaattacgtcttgggggagagcatctcttcaattcatcatcaatgagtatcttacaaa |
157 |
Q |
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| T |
38984662 |
gaacgaacaccacatatttgtatattcatttcttcccaaatttacttacgtcttaagggagaatatctctccaattaattttcaatgtgtatcttacaaa |
38984761 |
T |
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| Q |
158 |
gcgatacaagggttacaagtaataagccttcaacaataaaccctaatttctaccttgttctcaatctcttctcttaaataggaaac-tcaatgatttcat |
256 |
Q |
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| ||| ||| ||||||||| |||||| ||| ||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||| ||||||| | | | |
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| T |
38984762 |
gtgattcaatggttacaagaaataagtctttaacaataaaccctaatttctacctttttctcaatcgcttctcttaaacaggaaacttcaatgactacgt |
38984861 |
T |
|
| Q |
257 |
tctccaagatgtttagaataattcaaaatccaagagtctacc |
298 |
Q |
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| T |
38984862 |
tctccaaggtgtttagaataattccaaatccaa-agtctacc |
38984902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 138 - 210
Target Start/End: Original strand, 38985565 - 38985637
Alignment:
| Q |
138 |
atcaatgagtatcttacaaagcgatacaagggttacaagtaataagccttcaacaataaaccctaatttctac |
210 |
Q |
| |
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|||||| | |||||||||||| ||||||| ||||||||| ||||| |||||| ||||||||||||||||||| |
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| T |
38985565 |
atcaataaatatcttacaaagagatacaatggttacaagaaataaatcttcaataataaaccctaatttctac |
38985637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 192
Target Start/End: Complemental strand, 8832296 - 8832228
Alignment:
| Q |
124 |
ctcttcaattcatcatcaatgagtatcttacaaagcgatacaagggttacaagtaataagccttcaaca |
192 |
Q |
| |
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|||||||||||| |||||| ||| ||||||| ||||||||||||||||| |||||| |||||||| |
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| T |
8832296 |
ctcttcaattcactatcaataagttctttacaaatagatacaagggttacaagaaataagtcttcaaca |
8832228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 276
Target Start/End: Complemental strand, 11184336 - 11184209
Alignment:
| Q |
149 |
tcttacaaagcgatacaagggttacaagtaataagccttcaacaataaaccctaatttctaccttgttctcaatctcttctcttaaataggaaactcaat |
248 |
Q |
| |
|
|||||||||| ||||||| ||| || | ||| ||||||||||||||| | ||||| |||| | | ||||||||||||| ||| || | | ||||||| |
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| T |
11184336 |
tcttacaaagagatacaatagttgcatgaaattagccttcaacaataatctctaatctctatcattttctcaatctctttacttgaacaaaagactcaat |
11184237 |
T |
|
| Q |
249 |
gatttcattctccaagatgtttagaata |
276 |
Q |
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||||||| |||||||| |||||| |||| |
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| T |
11184236 |
gatttcactctccaaggtgtttaaaata |
11184209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 122 - 193
Target Start/End: Complemental strand, 24198017 - 24197946
Alignment:
| Q |
122 |
atctcttcaattcatcatcaatgagtatcttacaaagcgatacaagggttacaagtaataagccttcaacaa |
193 |
Q |
| |
|
|||||| |||| ||| ||||| |||| |||| ||||| ||||||||||||||||| ||| |||||||||||| |
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| T |
24198017 |
atctctccaatccattatcaaagagtttcttgcaaagagatacaagggttacaagaaattagccttcaacaa |
24197946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 253
Target Start/End: Complemental strand, 5868532 - 5868428
Alignment:
| Q |
149 |
tcttacaaagcgatacaagggttacaagtaataagccttcaacaataaaccctaatttctaccttgttctcaatctcttctcttaaataggaaactcaat |
248 |
Q |
| |
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|||||||||| ||||||| |||||| || ||||| |||| || |||||||||| ||| |||| |||||| ||||||| |||||| | || ||||||| |
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| T |
5868532 |
tcttacaaagagatacaatggttactagaaataaaccttaaagaataaacccttattactactcatttctcagtctcttcccttaaacaagagactcaat |
5868433 |
T |
|
| Q |
249 |
gattt |
253 |
Q |
| |
|
||||| |
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|
| T |
5868432 |
gattt |
5868428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 124 - 227
Target Start/End: Complemental strand, 16605711 - 16605608
Alignment:
| Q |
124 |
ctcttcaattcatcatcaatgagtatcttacaaagcgatacaagggttacaagtaataagccttcaacaataaaccctaatttctaccttgttctcaatc |
223 |
Q |
| |
|
|||| |||| ||| |||||||||| ||||| |||| ||||||| |||||||| ||| |||||||||||||||| |||||| ||| | ||| ||||| |
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|
| T |
16605711 |
ctctccaatccattatcaatgagtttcttataaagatatacaagagttacaagaaattgtccttcaacaataaaccttaatttttacaattttcccaatc |
16605612 |
T |
|
| Q |
224 |
tctt |
227 |
Q |
| |
|
|||| |
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|
| T |
16605611 |
tctt |
16605608 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 123 - 209
Target Start/End: Complemental strand, 3904270 - 3904182
Alignment:
| Q |
123 |
tctcttcaattcatcatcaatgagt--atcttacaaagcgatacaagggttacaagtaataagccttcaacaataaaccctaatttcta |
209 |
Q |
| |
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||||| ||||||| |||||||||| || |||| ||| |||||||||||||||| ||| | |||| ||||||||||||||||||||| |
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|
| T |
3904270 |
tctctccaattcaatatcaatgagtttatattactaagagatacaagggttacaaaaaattaaccttaaacaataaaccctaatttcta |
3904182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 149 - 210
Target Start/End: Original strand, 29501011 - 29501072
Alignment:
| Q |
149 |
tcttacaaagcgatacaagggttacaagtaataagccttcaacaataaaccctaatttctac |
210 |
Q |
| |
|
|||||| ||| ||||||||||||||||| ||| | ||||||||||| ||| ||||||||||| |
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|
| T |
29501011 |
tcttacgaagggatacaagggttacaagaaattatccttcaacaattaactctaatttctac |
29501072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0137 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0137
Description:
Target: scaffold0137; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 209
Target Start/End: Complemental strand, 11096 - 11038
Alignment:
| Q |
151 |
ttacaaagcgatacaagggttacaagtaataagccttcaacaataaaccctaatttcta |
209 |
Q |
| |
|
|||| ||| |||||||||||||||| ||| | |||| ||||||||||||||||||||| |
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|
| T |
11096 |
ttactaagagatacaagggttacaaaaaattaaccttaaacaataaaccctaatttcta |
11038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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