View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16755_high_25 (Length: 257)
Name: NF16755_high_25
Description: NF16755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16755_high_25 |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 23596460 - 23596208
Alignment:
| Q |
1 |
gagtccagaaatgacaccggcatccttagtagcttgacgttgtgaatcgttgaagtatgcaggcacggttacaacggcattcttaattgttgtaccaagg |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23596460 |
gagtccagaaatgacaccagcatccttagtagcttgacgttgtgaatcgttgaagtatgcaggcacggttacaacggcattcttaattgttgtaccaagg |
23596361 |
T |
|
| Q |
101 |
taagcctctgcgatctccttcatcttcataagaaccatggaagatatctcttcagcagaaaattgcttctcctctgccttgtagttcaccacgatcattg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23596360 |
taagcctctgcgatctccttcatcttcataagaaccatggaagatatctcttcagcagaaaattgcttctcctctgccttgtagttcaccacgatcattg |
23596261 |
T |
|
| Q |
201 |
gtttgtcagcagggccaggaatgaccttgaacggccacaatttcatctcactc |
253 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
23596260 |
gtttgtcagcagggccaggaatgaccttgaacggccacaatttcatgtcactc |
23596208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 23587608 - 23587363
Alignment:
| Q |
1 |
gagtccagaaatgacaccggcatccttagtagcttgacgttgtgaatcgttgaagtatgcaggcacggttacaacggcattcttaattgttgtaccaagg |
100 |
Q |
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|||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||| |
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| T |
23587608 |
gagtccagaaatgacaccggcatcttttgtagcttgacgttgtgaatcgttgaagtaagcaggcacagttacaacggcattcttaatcgttgtaccaaga |
23587509 |
T |
|
| Q |
101 |
taagcctctgcgatctccttcatcttcataagaaccatggaagatatctcttcagcagaaaattgcttctcctctgccttgtagttcaccacgatcattg |
200 |
Q |
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| T |
23587508 |
taagcctctgcaatctccttcattttcataagaaccatagaagatatctcttcagcggaaaattgcttctcttccgctttgtagttcaccacgatcattg |
23587409 |
T |
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| Q |
201 |
gtttgtcagcagggccaggaatgaccttgaacggccacaatttcat |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23587408 |
gtttgtcagcagggccaggaatgaccttgaacggccacaatttcat |
23587363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 8017288 - 8017036
Alignment:
| Q |
1 |
gagtccagaaatgacaccggcatccttagtagcttgacgttgtgaatcgttgaagtatgcaggcacggttacaacggcattcttaattgttgtaccaagg |
100 |
Q |
| |
|
|||||| | |||||||||||||||||| || |||||||| || ||||| |||||||| || || || || |||||||||||||| | |||| ||| ||| |
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| T |
8017288 |
gagtcctgcaatgacaccggcatcctttgtggcttgacgctgcgaatcattgaagtaagctggaactgtaacaacggcattcttcacagttgaaccgagg |
8017189 |
T |
|
| Q |
101 |
taagcctctgcgatctccttcatcttcataagaaccatggaagatatctcttcagcagaaaattgcttctcctctgccttgtagttcaccacgatcattg |
200 |
Q |
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||||| || || ||||| |||||| || || ||||| || || || || ||||||| ||||||||| ||||| |||||||||| || | ||||||| |
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| T |
8017188 |
taagcttcagcaatctcacgcatctttatgagtaccatagacgaaatttcctcagcagcaaattgcttgtcctcacccttgtagttaacaccaatcattg |
8017089 |
T |
|
| Q |
201 |
gtttgtcagcagggccaggaatgaccttgaacggccacaatttcatctcactc |
253 |
Q |
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| || ||| |||| |||| ||| ||||| || |||||||| ||||| |||||| |
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| T |
8017088 |
gcttttcaccaggaccagcaataaccttaaaaggccacaacttcatgtcactc |
8017036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 164
Target Start/End: Original strand, 39985958 - 39986102
Alignment:
| Q |
20 |
gcatccttagtagcttgacgttgtgaatcgttgaagtatgcaggcacggttacaacggcattcttaattgttgtaccaaggtaagcctctgcgatctcct |
119 |
Q |
| |
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|||||||| ||||||||||| || || || || ||||| ||||| || || ||||| ||||||||||| | | ||||||||| || || || ||||| |
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| T |
39985958 |
gcatccttggtagcttgacgctgggagtcattaaagtaagcagggacagtaacaacagcattcttaatggcagaaccaaggtacgcttcggcaatctcac |
39986057 |
T |
|
| Q |
120 |
tcatcttcataagaaccatggaagatatctcttcagcagaaaatt |
164 |
Q |
| |
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||||||||| || ||||||||||| |||||||| |||| ||||| |
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| T |
39986058 |
gcatcttcattagcaccatggaagagatctcttcggcagcaaatt |
39986102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 8102973 - 8103046
Alignment:
| Q |
14 |
acaccggcatccttagtagcttgacgttgtgaatcgttgaagtatgcaggcacggttacaacggcattcttaat |
87 |
Q |
| |
|
||||| ||||| ||||| |||||||| || ||||| |||||||| ||||| || || || |||||||||||||| |
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| T |
8102973 |
acaccagcatctttagttgcttgacgctgagaatcattgaagtaagcagggacagtgacgacggcattcttaat |
8103046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 168
Target Start/End: Complemental strand, 17717812 - 17717662
Alignment:
| Q |
18 |
cggcatccttagtagcttgacgttgtgaatcgttgaagtatgcaggcacggttacaacggcattcttaattgttgtaccaaggtaagcctctgcgatctc |
117 |
Q |
| |
|
|||||||||||||| |||| || ||||| || ||||| ||||| || || |||||||||||| |||| || | ||||| ||| |||||||| ||||| |
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| T |
17717812 |
cggcatccttagtaacttgtatctgagaatcattaaagtaagcagggacagtaacaacggcattcctaatggtagaaccaaagtaggcctctgcaatctc |
17717713 |
T |
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| Q |
118 |
cttcatcttcataagaaccatggaagatatctcttcagcagaaaattgctt |
168 |
Q |
| |
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||||||| || ||||||||||| |||||||| |||| ||||||||| |
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| T |
17717712 |
acgcatcttccagagtaccatggaagagatctcttctgcagcaaattgctt |
17717662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 86
Target Start/End: Original strand, 12234986 - 12235067
Alignment:
| Q |
5 |
ccagaaatgacaccggcatccttagtagcttgacgttgtgaatcgttgaagtatgcaggcacggttacaacggcattcttaa |
86 |
Q |
| |
|
|||| ||||||||| ||||| |||| |||| ||||| ||||| ||||| || ||||||||||| ||||| |||||||||| |
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| T |
12234986 |
ccagcaatgacaccagcatctatagttgcttttcgttgagaatcattgaaataagcaggcacggtaacaactgcattcttaa |
12235067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 84
Target Start/End: Complemental strand, 4678432 - 4678350
Alignment:
| Q |
2 |
agtccagaaatgacaccggcatccttagtagcttgacgttgtgaatcgttgaagtatgcaggcacggttacaacggcattctt |
84 |
Q |
| |
|
||||||| |||| |||| ||||| | ||||||| ||||| ||||| ||||||||||||||||| || |||||| ||||||| |
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| T |
4678432 |
agtccagcaatggcaccagcatctatggtagcttttcgttgagaatcattgaagtatgcaggcacagtaacaacgacattctt |
4678350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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