View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16755_high_28 (Length: 245)
Name: NF16755_high_28
Description: NF16755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16755_high_28 |
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| [»] chr6 (3 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 245
Target Start/End: Original strand, 2361676 - 2361903
Alignment:
| Q |
18 |
ggttcttgttggcgccaagtaaggaagattgcaacttcagagatcctcagccataggcatgtcgaacaacaacaatattttcatacctcagaagttcagg |
117 |
Q |
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| T |
2361676 |
ggttcttgttggcgccaagtaaggaagattgcaacttcagagatcctcagccataggcatgtcgaacaacaacaatattttcatacctcagaagttcagg |
2361775 |
T |
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| Q |
118 |
cgtggattaaagagctcttcaatgtttggtttagtaaaaagaacgagtcatcaaactacgcgttggtggagttaaagcaatggtttactcaattaagttt |
217 |
Q |
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| T |
2361776 |
cgtggattaaagagctcttcaatgtttggtttagtaaaaagaacgagtcatcaaactacgcgttggtggagttaaagcaatggtttactcaattaagttt |
2361875 |
T |
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| Q |
218 |
caacattgttcttccaatgctggttggg |
245 |
Q |
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| T |
2361876 |
caacattgttcttccagtgctggttggg |
2361903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 37 - 245
Target Start/End: Original strand, 2366299 - 2366507
Alignment:
| Q |
37 |
taaggaagattgcaacttcagagatcctcagccataggcatgtcgaacaacaacaatattttcatacctcagaagttcaggcgtggattaaagagctctt |
136 |
Q |
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| T |
2366299 |
taagaaagatagcaacttcagaaatgctcaccaatcggcgtgttgaacaacaacaacattttcatatcttagaagtgcaacggtggattaaagagctctt |
2366398 |
T |
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| Q |
137 |
caatgtttggtttagtaaaaagaacgagtcatcaaactacgcgttggtggagttaaagcaatggtttactcaattaagtttcaacattgttcttccaatg |
236 |
Q |
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| T |
2366399 |
cgatgtttggtttagtaaaaagaatgagtcatcaaactacgtgttggtggagatgaagcaatggttaactcaattgagtttcaatattgttcttccaatg |
2366498 |
T |
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| Q |
237 |
ctggttggg |
245 |
Q |
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| T |
2366499 |
ctggttggg |
2366507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 168
Target Start/End: Original strand, 2349447 - 2349492
Alignment:
| Q |
123 |
attaaagagctcttcaatgtttggtttagtaaaaagaacgagtcat |
168 |
Q |
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| T |
2349447 |
attaaagagctcttcgatgtttggtatagcaaaaagaaagagtcat |
2349492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 123 - 245
Target Start/End: Original strand, 41341688 - 41341810
Alignment:
| Q |
123 |
attaaagagctcttcaatgtttggtttagtaaaaagaacgagtcatcaaactacgcgttggtggagttaaagcaatggtttactcaattaagtttcaaca |
222 |
Q |
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| T |
41341688 |
attaaagaggtctacaatgtttggtgtagtagagagaacaagtcatcaaactatgtgttggtggacttgaaacaatgttttactcaattgagtaaaaaca |
41341787 |
T |
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| Q |
223 |
ttgttcttccaatgctggttggg |
245 |
Q |
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| T |
41341788 |
ttgttcttccaatgttggttggg |
41341810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 122 - 205
Target Start/End: Complemental strand, 5805897 - 5805808
Alignment:
| Q |
122 |
gattaaagagctcttcaatgtttggtttagtaaaaagaacgagt------catcaaactacgcgttggtggagttaaagcaatggtttac |
205 |
Q |
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| T |
5805897 |
gattaaagagctcttcaatatttggtctagaaaaaagaacgaatcaaatccatcaaactatgtgttggtggacttgaagcaatggtttac |
5805808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 122 - 211
Target Start/End: Original strand, 4303542 - 4303634
Alignment:
| Q |
122 |
gattaaagagctcttcaatgtttggtttagtaaa---aagaacgagtcatcaaactacgcgttggtggagttaaagcaatggtttactcaatt |
211 |
Q |
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| T |
4303542 |
gattaaagagctctacaatgtttggtgtcgtaaagagaacaacgagtcatcaaaatatttgatggtggaggtcaagcaatggtttactcaatt |
4303634 |
T |
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