View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16755_high_4 (Length: 492)
Name: NF16755_high_4
Description: NF16755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16755_high_4 |
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| [»] chr3 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 16 - 492
Target Start/End: Original strand, 50706939 - 50707417
Alignment:
| Q |
16 |
aacataaacacataatatattttatttttgaagagaatgttgacatcgaacatacgaaaaaactttaaacaaattgaaatatgctacccacccaaccaaa |
115 |
Q |
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| T |
50706939 |
aacataaacacataatatattttatttttaaagagaatgttgacatcgaacatacgaaaaaactttaaacaaattgaaatatgctact-acccaaccaaa |
50707037 |
T |
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| Q |
116 |
actaatatagcaattcatgcctatagtgtccaaaatcaggaaccataaaactagcactactattatcttttctctnnnnnnnnnnnnnnn---ctagcac |
212 |
Q |
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| T |
50707038 |
actaatatagcaattcatgcctatagtgtccaaaatcaggaaccataaaactagcactactattatcttttctctaaaaaaaaaaaaaaaaaactagcac |
50707137 |
T |
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| Q |
213 |
tgctactaagacctctcctcctatcacacctgtttgtagtgttattgaagattgaatagttatataatattggaagttgacgaggaacatgaattcatgt |
312 |
Q |
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| T |
50707138 |
tactactaagacctctcttcctatcacacctgtttgtagtgttattgaagattgaatagttatataatattggaagttgacgaggaacatgaattcatgt |
50707237 |
T |
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| Q |
313 |
gaatctctttcccttgcaaagatgcatctaaattaagcttcaattttttcaaagaagtcttaaattgctcaagagatgccaaagccatatcatcaataga |
412 |
Q |
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| T |
50707238 |
gaatctctttcccttgcaaagatgcatctaaattaagcttcaattttttcaaagaagtcttaaattgcttaagagattccaaagccatatcatcaataga |
50707337 |
T |
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| Q |
413 |
atgatcccaccaagaaggaaggcatgaactactcttgtttgtctcttttacagcttgtaaattattcttctcttctttca |
492 |
Q |
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| T |
50707338 |
atgatcccaccaagaaggaaggcatgaactactgttgtttgtctcttttacagcttgtaaattattcttctcttctttca |
50707417 |
T |
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Target: chr8 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 324 - 492
Target Start/End: Original strand, 8167179 - 8167347
Alignment:
| Q |
324 |
ccttgcaaagatgcatctaaattaagcttcaattttttcaaagaagtcttaaattgctcaagagatgccaaagccatatcatcaatagaatgatcccacc |
423 |
Q |
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| T |
8167179 |
ccttgcaaggatgcatctaaattaagcttcaattttaccaaagaagtcttaaattgctcaagagattccaaagccatatcatcaatagaatgaccccacc |
8167278 |
T |
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| Q |
424 |
aagaaggaaggcatgaactactcttgtttgtctcttttacagcttgtaaattattcttctcttctttca |
492 |
Q |
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| T |
8167279 |
agcaagaaaaacatgaactactcttgtttctctcttttacaccttctaaataattattctcttctttca |
8167347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 381 - 425
Target Start/End: Complemental strand, 19588120 - 19588076
Alignment:
| Q |
381 |
tcaagagatgccaaagccatatcatcaatagaatgatcccaccaa |
425 |
Q |
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| T |
19588120 |
tcaagagatgctaaatccatatcatcaatagaattattccaccaa |
19588076 |
T |
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