View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16755_high_5 (Length: 453)
Name: NF16755_high_5
Description: NF16755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16755_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 19 - 385
Target Start/End: Original strand, 17488430 - 17488796
Alignment:
| Q |
19 |
aaggatggattttccaaattgcaagacactactattaactactgaaagatgaagacttgcaaggtgggtcagtattttgagcaagatacccttttgtttc |
118 |
Q |
| |
|
|||||||||||||||||| | |||||||||||| ||||||||||||||||||||| || ||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
17488430 |
aaggatggattttccaaaattcaagacactactgttaactactgaaagatgaagattttcaaggcaggtcagtattttgagcaagataccattttgtttc |
17488529 |
T |
|
| Q |
119 |
tcacaatggactatgacaagtacatcnnnnnnngacactcttgctttgatctctggaagagtattatcacttgctccacaattgtactcatctgaattca |
218 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
17488530 |
tcacaatggactatgacaagtacatcattttgtaacacttttgctttgacctctggaagagtattatcacttgttccacaactgtactcatctgaattca |
17488629 |
T |
|
| Q |
219 |
ctttagtccttttgtttgtacaaatgttggatccatcttcttgttccagctctctcacacgttcttgaagtgttgctacatagtctctagcattttctat |
318 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17488630 |
ctttggtccttttgtttgtacaaatgttggatccatcttcttgttctagctctctcacacgttcttgaagtgttgctacatagtctctagcattttctat |
17488729 |
T |
|
| Q |
319 |
gatcgaaatttcgtccatctacacatttatatagagaaataaatttcacttttcatccctattatta |
385 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17488730 |
gatcgaaatttcgtccatctacacatttatatagagaaataaatttcacttttcatccctattatta |
17488796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 19 - 385
Target Start/End: Complemental strand, 17564784 - 17564418
Alignment:
| Q |
19 |
aaggatggattttccaaattgcaagacactactattaactactgaaagatgaagacttgcaaggtgggtcagtattttgagcaagatacccttttgtttc |
118 |
Q |
| |
|
|||||||||||||||||| | |||||||||||| ||||||||||||||||||||| || ||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
17564784 |
aaggatggattttccaaaattcaagacactactgttaactactgaaagatgaagattttcaaggcaggtcagtattttgagcaagataccattttgtttc |
17564685 |
T |
|
| Q |
119 |
tcacaatggactatgacaagtacatcnnnnnnngacactcttgctttgatctctggaagagtattatcacttgctccacaattgtactcatctgaattca |
218 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
17564684 |
tcacaatggactatgacaagtacatcattttgtaacacttttgctttgacctctggaagagtattatcacttgttccacaactgtactcatctgaattca |
17564585 |
T |
|
| Q |
219 |
ctttagtccttttgtttgtacaaatgttggatccatcttcttgttccagctctctcacacgttcttgaagtgttgctacatagtctctagcattttctat |
318 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17564584 |
ctttggtccttttgtttgtacaaatgttggatccatcttcttgttctagctctctcacacgttcttgaagtgttgctacatagtctctagcattttctat |
17564485 |
T |
|
| Q |
319 |
gatcgaaatttcgtccatctacacatttatatagagaaataaatttcacttttcatccctattatta |
385 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17564484 |
gatcgaaatttcgtccatctacacatttatatagagaaataaatttcacttttcatccctattatta |
17564418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 218; Significance: 1e-119; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 19 - 309
Target Start/End: Original strand, 1869583 - 1869873
Alignment:
| Q |
19 |
aaggatggattttccaaattgcaagacactactattaactactgaaagatgaagacttgcaaggtgggtcagtattttgagcaagatacccttttgtttc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1869583 |
aaggatggattttccaaattgcaagacactactattaactactgaaagatgaagacttgcaaggtgggtcagtattttgagcaagatacccttttgtttc |
1869682 |
T |
|
| Q |
119 |
tcacaatggactatgacaagtacatcnnnnnnngacactcttgctttgatctctggaagagtattatcacttgctccacaattgtactcatctgaattca |
218 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
1869683 |
tcacaatggactatgacaagtacatctttttttgacactcttgctttgatctctggaagagtattatcacctgttccacaattgtactcatctgaattca |
1869782 |
T |
|
| Q |
219 |
ctttagtccttttgtttgtacaaatgttggatccatcttcttgttccagctctctcacacgttcttgaagtgttgctacatagtctctagc |
309 |
Q |
| |
|
|||| ||||||||||| |||||||||| |||||| |||||||||| |||||||||||||||||| |||| || | |||||||||||||| |
|
|
| T |
1869783 |
ctttggtccttttgttgctacaaatgtttgatccagcttcttgttctagctctctcacacgttctgcaagtttttccacatagtctctagc |
1869873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 211 - 349
Target Start/End: Original strand, 1916916 - 1917054
Alignment:
| Q |
211 |
tgaattcactttagtccttttgtttgtacaaatgttggatccatcttcttgttccagctctctcacacgttcttgaagtgttgctacatagtctctagca |
310 |
Q |
| |
|
|||| ||| ||| ||||||||||| |||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1916916 |
tgaactcagtttggtccttttgttagtacaaatgttggatccagcttcttcttctagctctctcacacgttcttgaagtgttgctaaatagtctctagct |
1917015 |
T |
|
| Q |
311 |
ttttctatgatcgaaatttcgtccatctacacatttata |
349 |
Q |
| |
|
| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
1917016 |
tgttctatgatcgaaagttcgtccatctacacatttata |
1917054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 19 - 181
Target Start/End: Original strand, 1916748 - 1916910
Alignment:
| Q |
19 |
aaggatggattttccaaattgcaagacactactattaactactgaaagatgaagacttgcaaggtgggtcagtattttgagcaagatacccttttgtttc |
118 |
Q |
| |
|
|||||||||||||||||| | |||||| ||||| ||||||||||||||||||||| || |||||| ||||||||||||||||| ||||| ||||||||| |
|
|
| T |
1916748 |
aaggatggattttccaaaattcaagactctactgttaactactgaaagatgaagattttcaaggtaggtcagtattttgagcagaataccattttgtttc |
1916847 |
T |
|
| Q |
119 |
tcacaatggactatgacaagtacatcnnnnnnngacactcttgctttgatctctggaagagta |
181 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||| |
|
|
| T |
1916848 |
tcacaatggactatgacaagtacatctttttgtaacacttttgctttgacctctggaagagta |
1916910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University