View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16755_low_10 (Length: 357)

Name: NF16755_low_10
Description: NF16755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16755_low_10
NF16755_low_10
[»] chr6 (11 HSPs)
chr6 (263-331)||(26890870-26890938)
chr6 (238-323)||(26641231-26641316)
chr6 (238-323)||(26747197-26747282)
chr6 (280-331)||(27651844-27651895)
chr6 (274-331)||(27713769-27713826)
chr6 (209-288)||(26966479-26966559)
chr6 (211-293)||(26631875-26631958)
chr6 (211-293)||(26737850-26737933)
chr6 (209-247)||(26651403-26651441)
chr6 (209-247)||(26757371-26757409)
chr6 (214-272)||(26854111-26854169)
[»] chr4 (3 HSPs)
chr4 (254-327)||(18682696-18682769)
chr4 (267-311)||(18692037-18692081)
chr4 (295-327)||(18650319-18650351)
[»] scaffold0349 (1 HSPs)
scaffold0349 (274-331)||(18118-18175)
[»] chr8 (1 HSPs)
chr8 (274-331)||(29269635-29269692)


Alignment Details
Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 263 - 331
Target Start/End: Complemental strand, 26890938 - 26890870
Alignment:
Q  263 agagattgtgatgaaccatctgtcagtatcacaatatgtacaaactcttgtattcttaaaagcaaatta 331  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  26890938 agagattgtgatgaaccatctgtcagtatcacaatatgtacaaactcttgtactcttaaaagcaaatta 26890870  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 238 - 323
Target Start/End: Complemental strand, 26641316 - 26641231
Alignment:
Q  238 gaaatggaagctctcgtcattgaacagagattgtgatgaaccatctgtcagtatcacaatatgtacaaactcttgtattcttaaaa 323  Q
    |||||||||| || | ||||||||| |||||||||||||||||||||||| ||||||| |||||| |||| ||||||||| |||||    
T  26641316 gaaatggaagttcacatcattgaactgagattgtgatgaaccatctgtcaatatcacagtatgtagaaacacttgtattcctaaaa 26641231  T

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Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 238 - 323
Target Start/End: Complemental strand, 26747282 - 26747197
Alignment:
Q  238 gaaatggaagctctcgtcattgaacagagattgtgatgaaccatctgtcagtatcacaatatgtacaaactcttgtattcttaaaa 323  Q
    |||||||||| || | ||||||||| |||||||||||||||||||||||| ||||||| |||||| |||| ||||||||| |||||    
T  26747282 gaaatggaagttcacatcattgaactgagattgtgatgaaccatctgtcaatatcacagtatgtagaaacacttgtattcctaaaa 26747197  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 280 - 331
Target Start/End: Original strand, 27651844 - 27651895
Alignment:
Q  280 atctgtcagtatcacaatatgtacaaactcttgtattcttaaaagcaaatta 331  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  27651844 atctgtcagtatcgcaatatgtacaaactcttgtattcgtaaaagcaaatta 27651895  T

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Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 274 - 331
Target Start/End: Original strand, 27713769 - 27713826
Alignment:
Q  274 tgaaccatctgtcagtatcacaatatgtacaaactcttgtattcttaaaagcaaatta 331  Q
    |||| |||||||| ||||||||||||||||| ||||||||||| ||||||||||||||    
T  27713769 tgaaacatctgtcggtatcacaatatgtacatactcttgtattattaaaagcaaatta 27713826  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 288
Target Start/End: Complemental strand, 26966559 - 26966479
Alignment:
Q  209 tgtaattaataatcaaacacttcattggagaaatggaagctctcgtcattgaacagaga-ttgtgatgaaccatctgtcag 288  Q
    |||||||||||||||||||||  ||| |||||||||||| || | ||||| || ||||| ||| ||||| |||||||||||    
T  26966559 tgtaattaataatcaaacactatatttgagaaatggaagttcacatcattaaatagagatttgagatgagccatctgtcag 26966479  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 211 - 293
Target Start/End: Complemental strand, 26631958 - 26631875
Alignment:
Q  211 taattaataatcaaacacttcattggagaaatggaagctctcgtcattgaacagaga-ttgtgatgaaccatctgtcagtatca 293  Q
    |||||||||||||||||||| ||| |||||||||||| |  | |||||||| ||||| |||  || ||||||||||||| ||||    
T  26631958 taattaataatcaaacactttatttgagaaatggaagttaacatcattgaatagagatttgacattaaccatctgtcagaatca 26631875  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 211 - 293
Target Start/End: Complemental strand, 26737933 - 26737850
Alignment:
Q  211 taattaataatcaaacacttcattggagaaatggaagctctcgtcattgaacagaga-ttgtgatgaaccatctgtcagtatca 293  Q
    |||||||||||||||||||| ||| |||||||||||| |  | |||||||| ||||| |||  || ||||||||||||| ||||    
T  26737933 taattaataatcaaacactttatttgagaaatggaagttaacatcattgaatagagatttgacattaaccatctgtcagaatca 26737850  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 247
Target Start/End: Complemental strand, 26651441 - 26651403
Alignment:
Q  209 tgtaattaataatcaaacacttcattggagaaatggaag 247  Q
    |||||||||||||||||||||| ||| ||||||||||||    
T  26651441 tgtaattaataatcaaacactttatttgagaaatggaag 26651403  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 247
Target Start/End: Complemental strand, 26757409 - 26757371
Alignment:
Q  209 tgtaattaataatcaaacacttcattggagaaatggaag 247  Q
    |||||||||||||||||||||| ||| ||||||||||||    
T  26757409 tgtaattaataatcaaacactttatttgagaaatggaag 26757371  T

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Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 272
Target Start/End: Complemental strand, 26854169 - 26854111
Alignment:
Q  214 ttaataatcaaacacttcattggagaaatggaagctctcgtcattgaacagagattgtg 272  Q
    |||||||| || ||||| ||| |||||||||||  || |||||||||||||||||||||    
T  26854169 ttaataattaatcactttatttgagaaatggaatatcacgtcattgaacagagattgtg 26854111  T

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Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 254 - 327
Target Start/End: Original strand, 18682696 - 18682769
Alignment:
Q  254 tcattgaacagagattgtgatgaaccatctgtcagtatcacaatatgtacaaactcttgtattcttaaaagcaa 327  Q
    |||||| ||||||||||||| ||||||||| || |||| | |||||||||| ||||||||||||||||||||||    
T  18682696 tcattgtacagagattgtgacgaaccatctatcggtatgaaaatatgtacatactcttgtattcttaaaagcaa 18682769  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 311
Target Start/End: Original strand, 18692037 - 18692081
Alignment:
Q  267 attgtgatgaaccatctgtcagtatcacaatatgtacaaactctt 311  Q
    |||||||||||||||||||| |||| | |||||||||||||||||    
T  18692037 attgtgatgaaccatctgtcggtatgaaaatatgtacaaactctt 18692081  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 327
Target Start/End: Original strand, 18650319 - 18650351
Alignment:
Q  295 aatatgtacaaactcttgtattcttaaaagcaa 327  Q
    |||||||||| ||||||||||||||||||||||    
T  18650319 aatatgtacatactcttgtattcttaaaagcaa 18650351  T

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Target: scaffold0349 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 274 - 331
Target Start/End: Complemental strand, 18175 - 18118
Alignment:
Q  274 tgaaccatctgtcagtatcacaatatgtacaaactcttgtattcttaaaagcaaatta 331  Q
    |||| |||||||| ||||||||||||||||| ||||||||||| ||||||||||||||    
T  18175 tgaaacatctgtcggtatcacaatatgtacatactcttgtattattaaaagcaaatta 18118  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 274 - 331
Target Start/End: Original strand, 29269635 - 29269692
Alignment:
Q  274 tgaaccatctgtcagtatcacaatatgtacaaactcttgtattcttaaaagcaaatta 331  Q
    |||| |||| ||| |||||||||||| |||| ||||||||||| ||||||||||||||    
T  29269635 tgaaacatcagtcggtatcacaatatctacatactcttgtattattaaaagcaaatta 29269692  T

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