View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16755_low_11 (Length: 351)

Name: NF16755_low_11
Description: NF16755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16755_low_11
NF16755_low_11
[»] chr2 (3 HSPs)
chr2 (258-334)||(42367931-42368007)
chr2 (1-45)||(42368239-42368283)
chr2 (258-305)||(9261862-9261909)
[»] chr1 (3 HSPs)
chr1 (258-328)||(33941700-33941770)
chr1 (258-305)||(29000217-29000264)
chr1 (3-45)||(33941458-33941500)
[»] chr3 (1 HSPs)
chr3 (1-45)||(20486149-20486193)
[»] chr4 (1 HSPs)
chr4 (258-305)||(44664015-44664062)


Alignment Details
Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 258 - 334
Target Start/End: Complemental strand, 42368007 - 42367931
Alignment:
Q  258 tctagaattgaaacacaccaattcatcaatttcttcctccattgaaaagcaagttcagccataaacaaagcaagttc 334  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42368007 tctagaattgaaacacaccaattcatcaatttcttcctccattgaaaagcaagttcagccataaacaaagcaagttc 42367931  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 42368239 - 42368283
Alignment:
Q  1 ctgttatatacagtggacctacaatcaaatggttaaaatcatatt 45  Q
    |||||||||||||||||| |||||||||| |||||||||||||||    
T  42368239 ctgttatatacagtggacttacaatcaaacggttaaaatcatatt 42368283  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 258 - 305
Target Start/End: Original strand, 9261862 - 9261909
Alignment:
Q  258 tctagaattgaaacacaccaattcatcaatttcttcctccattgaaaa 305  Q
    |||| ||||||||||||  |||||||||||||||||||||||||||||    
T  9261862 tctaaaattgaaacacaataattcatcaatttcttcctccattgaaaa 9261909  T

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Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 258 - 328
Target Start/End: Original strand, 33941700 - 33941770
Alignment:
Q  258 tctagaattgaaacacaccaattcatcaatttcttcctccattgaaaagcaagttcagccataaacaaagc 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  33941700 tctagaattgaaacacaccaattcatcaatttcttcctccattgaaaagaaagttcagccataaacaaagc 33941770  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 258 - 305
Target Start/End: Original strand, 29000217 - 29000264
Alignment:
Q  258 tctagaattgaaacacaccaattcatcaatttcttcctccattgaaaa 305  Q
    ||||||||||||||||| ||||||||  |||||||||| |||||||||    
T  29000217 tctagaattgaaacacaacaattcattgatttcttccttcattgaaaa 29000264  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 33941500 - 33941458
Alignment:
Q  3 gttatatacagtggacctacaatcaaatggttaaaatcatatt 45  Q
    ||||||||||||| |||| |||||||| |||||||||||||||    
T  33941500 gttatatacagtgcacctgcaatcaaacggttaaaatcatatt 33941458  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 20486193 - 20486149
Alignment:
Q  1 ctgttatatacagtggacctacaatcaaatggttaaaatcatatt 45  Q
    |||||||||||||| ||||| |||||||||| |||||||||||||    
T  20486193 ctgttatatacagtcgacctgcaatcaaatgattaaaatcatatt 20486149  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 258 - 305
Target Start/End: Complemental strand, 44664062 - 44664015
Alignment:
Q  258 tctagaattgaaacacaccaattcatcaatttcttcctccattgaaaa 305  Q
    ||||||||||||||||| ||||||||  |||||||||| |||||||||    
T  44664062 tctagaattgaaacacaacaattcattgatttcttccttcattgaaaa 44664015  T

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