View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16755_low_13 (Length: 347)
Name: NF16755_low_13
Description: NF16755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16755_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 38090129 - 38089793
Alignment:
| Q |
1 |
tttgttattgtaaatgactgggtaaccaaatatttgtttgaaactttgaattatacattattggtccgactcttgaaggaaaaagataatctaatattgg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38090129 |
tttgttattgtaaatgactgggtaaccaaatatttgtttgaaactttgaattatacattattggtccgactcttgaaggaaaaagataatctaatattgg |
38090030 |
T |
|
| Q |
101 |
agtcattaattgaaggttgggcgaacttcaagaaatatgaagtaatgg-----tgataaccaatgtggctcttttacggaccaatttttctccatccctc |
195 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
38090029 |
agtcattaattgaaggttgggcgaacttcaagaaatatgaagtaatggattggtgataaccaatgtggctcttttacgtaccaatttttctccatccctc |
38089930 |
T |
|
| Q |
196 |
agtcctccatttcttcagttgtaagcatgcttgaaggaaaaataaatgttcaagaagggatggcagaataaactaaggtattagatgataagaaatataa |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38089929 |
agtcctccatttcttcagttgtaagcatgcttgaaggaaaaataaatgttcaagaagggatggcagaataaactaaggtattagatgataagaaatataa |
38089830 |
T |
|
| Q |
296 |
ggggatgcaacaatactacaaacatggaggagaaaat |
332 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
38089829 |
ggggatgcaacaatactacaaacatggaggagaaaat |
38089793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 98 - 303
Target Start/End: Complemental strand, 38092022 - 38091814
Alignment:
| Q |
98 |
tggagtcattaattgaaggttgggcgaa--cttcaagaaatatgaagtaatggtgataaccaatgtggctcttttacggaccaatttttctccatccctc |
195 |
Q |
| |
|
||||||| || || ||||||| |||||| |||||||||| |||||||||||||||| ||||||||| ||||||| ||||||||||||| ||| ||| |
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| T |
38092022 |
tggagtcgttgatcgaaggtttggcgaagacttcaagaaagtggaagtaatggtgataattaatgtggctattttacgtaccaatttttctctatctctc |
38091923 |
T |
|
| Q |
196 |
a-gtcctccatttcttcagttgtaagcatgcttgaaggaaaaataaatgttcaagaagggatggcagaataaactaaggtattagatgataagaaatata |
294 |
Q |
| |
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| | ||||| | |||| ||||||||||||||||||| ||| | ||||||||||||||| || ||||| ||||||||||||| ||||||||||||||| |
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|
| T |
38091922 |
acgccctccttgtctttagttgtaagcatgcttgaatgaagactaaatgttcaagaagttgtgatagaattaactaaggtattacatgataagaaatata |
38091823 |
T |
|
| Q |
295 |
aggggatgc |
303 |
Q |
| |
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||| ||||| |
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|
| T |
38091822 |
aggtgatgc |
38091814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 125 - 332
Target Start/End: Original strand, 38089247 - 38089455
Alignment:
| Q |
125 |
acttcaagaaatatgaagtaatggtgataaccaatgtggctcttttacggaccaatttttctccatccctcagtcc-tccatttcttcagttgtaagcat |
223 |
Q |
| |
|
|||| |||||| | |||||||||||||| | ||||||||||||| || | |||||||||||||||||| ||| || ||||| | ||||| |||||| |
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|
| T |
38089247 |
acttgaagaaagaggaagtaatggtgatgatcaatgtggctcttatatgcaccaatttttctccatccttcatgccatccatgttggaagttgaaagcat |
38089346 |
T |
|
| Q |
224 |
gcttgaaggaaaaataaatgttcaagaagggatggcagaataaactaaggtattagatgataagaaatataaggggatgcaacaatactacaaacatgga |
323 |
Q |
| |
|
||||||||||| | ||| |||||||||| | ||||||||| || | ||||||| |||||||||||||||||| ||||| |||||||||||||||| | |
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|
| T |
38089347 |
gcttgaaggaagcacaaaagttcaagaagcggtggcagaatcaaatgaggtattgaatgataagaaatataaggtgatgcgacaatactacaaacatata |
38089446 |
T |
|
| Q |
324 |
ggagaaaat |
332 |
Q |
| |
|
||||||||| |
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|
| T |
38089447 |
ggagaaaat |
38089455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 3 - 332
Target Start/End: Complemental strand, 21008176 - 21007844
Alignment:
| Q |
3 |
tgttattgtaaatgactgggtaaccaaatatttgtttgaaactttgaattatacatt--attggtccgactcttgaaggaaaaagataatctaatattgg |
100 |
Q |
| |
|
||||||||| ||||||||||| | || || ||| |||||||||| |||||||||||| | || || |||||||||||||| ||||||||||| || |
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|
| T |
21008176 |
tgttattgtgaatgactgggttatcagatctttatttgaaacttagaattatacatttaacaggcgcgcctcttgaaggaaaaggataatctaat---gg |
21008080 |
T |
|
| Q |
101 |
ag-tcattaattgaaggttgggcgaa--cttcaagaaatatgaagtaatggtgataaccaatgtggctcttttacggaccaatttttctccatccctcag |
197 |
Q |
| |
|
|| | || || | |||||||||||| |||||||||| | || |||| | |||| | ||| || ||||||||| | |||| ||||||||| || ||||| |
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|
| T |
21008079 |
agcttgttgatcggaggttgggcgaagacttcaagaaagaggaggtaacgatgatgatcaacgttgctcttttatgcaccagtttttctccttcgctcag |
21007980 |
T |
|
| Q |
198 |
tcct-ccatttcttcagttgtaagcatgcttgaaggaaaaataaatgttcaagaagggatggcagaataaactaaggtattagatgataagaaatataag |
296 |
Q |
| |
|
||| |||| ||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||| |||| ||||||| |||||||||||||||||| |
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|
| T |
21007979 |
gccttccatgtcttcagttgtaagcatgcttgaaggaaaaacaaatgttcaagaagtggtggcagaatcaactgaggtattggatgataagaaatataag |
21007880 |
T |
|
| Q |
297 |
gggatgcaacaatactacaaacatggaggagaaaat |
332 |
Q |
| |
|
| ||||||||||||||||||| || ||||||||||| |
|
|
| T |
21007879 |
gtgatgcaacaatactacaaatatagaggagaaaat |
21007844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 114 - 332
Target Start/End: Original strand, 21003724 - 21003945
Alignment:
| Q |
114 |
aggttgggcgaa--cttcaagaaatatgaagtaatggtgataaccaatgtggctcttttacggaccaatttttctccatccctcagtcc-tccatttctt |
210 |
Q |
| |
|
|||||||||||| |||||||||| | || |||||| |||| | ||| || ||||||||| | |||| |||||||||||| ||||| || ||||| |||| |
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|
| T |
21003724 |
aggttgggcgaagacttcaagaaagaggaggtaatgatgatgatcaacgttgctcttttatgtaccagtttttctccatcgctcaggccctccatgtctt |
21003823 |
T |
|
| Q |
211 |
cagttgtaagcatgcttgaaggaaaaataaatgttcaagaagggatggcagaataaactaaggtattagatgataagaaatataaggggatgcaacaata |
310 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||||||| | ||||||||| || | ||||||| ||||||||||||||||||| |||||||||||| |
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|
| T |
21003824 |
cagttgtaagcatgtttgaaggaaaaacaaatgttcaagaagtggtggcagaatcaagtgaggtattggatgataagaaatataaggtgatgcaacaata |
21003923 |
T |
|
| Q |
311 |
ctacaaacatggaggagaaaat |
332 |
Q |
| |
|
|||||||||| |||||||||| |
|
|
| T |
21003924 |
ctacaaacataaaggagaaaat |
21003945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 125 - 234
Target Start/End: Complemental strand, 19874745 - 19874635
Alignment:
| Q |
125 |
acttcaagaaatatgaagtaatggtgataaccaatgtggctcttttacggaccaatttttctccatccctcagtcc-tccatttcttcagttgtaagcat |
223 |
Q |
| |
|
||||||||||| | |||||||| |||| | | |||| ||||||||| | ||||||| ||||||||||||||| || ||||| ||||||||||||||||| |
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|
| T |
19874745 |
acttcaagaaagaggaagtaattttgatgatcgatgttgctcttttatgcaccaattcttctccatccctcaggccatccatgtcttcagttgtaagcat |
19874646 |
T |
|
| Q |
224 |
gcttgaaggaa |
234 |
Q |
| |
|
||||||||||| |
|
|
| T |
19874645 |
gcttgaaggaa |
19874635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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