View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16755_low_15 (Length: 334)
Name: NF16755_low_15
Description: NF16755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16755_low_15 |
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| [»] scaffold0975 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 18 - 332
Target Start/End: Complemental strand, 23048534 - 23048220
Alignment:
| Q |
18 |
gtattttatgatatgacatttgcctttgttgttgcaaacattcaaatgttctcctaattcatgatggtaagtaaccataaagataggttccatttctgca |
117 |
Q |
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| T |
23048534 |
gtattttatgatatgatatttgccttcgttgttgcaaacattcaaatgttctcctaattcatgatggtaagtaaccataaagataggttccatttctgca |
23048435 |
T |
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| Q |
118 |
tagttctnnnnnnnggaataatagttattgaatgatattccacagaaggtttcctaccatgaattgggaaagcaaatattctccaacatgcttcacttgg |
217 |
Q |
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| T |
23048434 |
tagttctaaaaaaaggaataatagttgttgaatgatgttccacagaaggtttcctaccatgaattgggaaagcaaatattctccaacatgcttcacttgg |
23048335 |
T |
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| Q |
218 |
tgatacgtaacgacagtctaggtactttttgatctcatcagcgttagtatccttgacattaccttgatttgacttatcgggaaccacagctgcagttatg |
317 |
Q |
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| T |
23048334 |
agatacgtaacgacagtctaggtactttttgatctcatcagcgttagtatccttgacattaccttgatttgacttatcgggaaccacagctgcagttatg |
23048235 |
T |
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| Q |
318 |
cggtcataacctttg |
332 |
Q |
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| T |
23048234 |
aggtcataacctttg |
23048220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0975 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: scaffold0975
Description:
Target: scaffold0975; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 1547 - 1412
Alignment:
| Q |
18 |
gtattttatgatatgacatttgcctttgttgttgcaaacattcaaatgttctcctaattcatgatggtaagtaaccataaagataggttccatttctgca |
117 |
Q |
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| T |
1547 |
gtattttatgatatgacatttgccttcgttgttgcaaacattcaaatgttctcctaattcatgatggtaagtaactataaagataggttccatttctgca |
1448 |
T |
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| Q |
118 |
tagttctnnnnnnnggaataatagttattgaatgat |
153 |
Q |
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| T |
1447 |
tagttctaaaaaaaggaataatagttattgaatgat |
1412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 257
Target Start/End: Original strand, 23180032 - 23180121
Alignment:
| Q |
168 |
ttcctaccatgaattgggaaagcaaatattctccaacatgcttcacttggtgatacgtaacgacagtctaggtactttttgatctcatca |
257 |
Q |
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|||| |||||| ||||| || | ||| ||||||||||||||||||| ||||||||| || | ||| || | ||| | ||||||||||||| |
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| T |
23180032 |
ttccgaccatgtattggaaatgaaaaaattctccaacatgcttcacctggtgatacatacctacaatcaaagtattgtttgatctcatca |
23180121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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