View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16755_low_18 (Length: 324)

Name: NF16755_low_18
Description: NF16755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16755_low_18
NF16755_low_18
[»] chr1 (1 HSPs)
chr1 (1-315)||(5922663-5922968)
[»] chr8 (3 HSPs)
chr8 (1-259)||(12589402-12589660)
chr8 (1-255)||(31905788-31906042)
chr8 (1-255)||(35984033-35984287)
[»] chr6 (12 HSPs)
chr6 (1-259)||(29468849-29469107)
chr6 (1-259)||(28490750-28491008)
chr6 (1-259)||(29803160-29803418)
chr6 (4-262)||(29674293-29674551)
chr6 (2-255)||(29695677-29695927)
chr6 (101-259)||(29759755-29759913)
chr6 (2-255)||(28479660-28479910)
chr6 (2-255)||(29792115-29792365)
chr6 (86-252)||(28901339-28901505)
chr6 (174-259)||(26937762-26937847)
chr6 (192-259)||(29724731-29724798)
chr6 (192-248)||(29843369-29843425)
[»] chr3 (1 HSPs)
chr3 (1-255)||(614434-614688)
[»] scaffold0012 (2 HSPs)
scaffold0012 (101-259)||(239125-239283)
scaffold0012 (101-252)||(212433-212584)
[»] scaffold0573 (1 HSPs)
scaffold0573 (86-252)||(8289-8455)
[»] chr5 (2 HSPs)
chr5 (178-255)||(16691604-16691681)
chr5 (209-254)||(19044927-19044972)
[»] scaffold0007 (1 HSPs)
scaffold0007 (59-252)||(67047-67240)


Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 5922663 - 5922968
Alignment:
Q  1 tagaagcaaaagaaccttctttttccggagcctttgttgtattactgaaattccttgtttaacacttgttaactcaatctccttctctccaattatttcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5922663 tagaagcaaaagaaccttctttttccggagcctttgttgtattactgaaattccttgtttaacacttgttaactcaatctccttctctccaattatttcc 5922762  T
Q  101 gaaagaatgatcttttggagatatatcaacccatgtttctctgaattttcccgaatgttttcaagaaagcatgaactttcaaattgatggacaatcaaat 200  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5922763 aaaagaatgatcttttggagatatatcaacccatgtttctctgaattttcctgaatgttttcaagaaagcatgaactttcaaattgatggacaatcaaat 5922862  T
Q  201 tatagacttctagagcaagagttgttttaccaattccaccaattccatggatccctaccttggcaactctgtcatcacaaccaacattcaaaagtgaaag 300  Q
    ||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5922863 tatagacttctagagcaagagttgtttt---------accaattccatggatccctaccttggcaactctgtcatcacaaccaacattcaaaagtgaaag 5922953  T
Q  301 tacatttttcctttg 315  Q
    |||||||||||||||    
T  5922954 tacatttttcctttg 5922968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 12589660 - 12589402
Alignment:
Q  1 tagaagcaaaagaaccttctttttccggagcctttgttgtattactgaaattccttgtttaacacttgttaactcaatctccttctctccaattatttcc 100  Q
    |||||||||||||||||||||||  |||||||||||||||| || ||| |||||||||  ||||||||||||||| || |||||||||||||  ||||      
T  12589660 tagaagcaaaagaaccttcttttggcggagcctttgttgtaatattgacattccttgtccaacacttgttaactccatgtccttctctccaagaatttga 12589561  T
Q  101 gaaagaatgatcttttggagatatatcaacccatgtttctctgaattttcccgaatgttttcaagaaagcatgaactttcaaattgatggacaatcaaat 200  Q
    || |||| |||||||||||||||||||||||||| |||||| |||||||| | ||  ||||||||||| || |||| || |||| ||  |||||   |||    
T  12589560 gacagaaggatcttttggagatatatcaacccatttttctcagaattttctctaactttttcaagaaaacaggaaccttgaaatagacagacaactgaat 12589461  T
Q  201 tatagacttctagagcaagagttgttttaccaattccaccaattccatggatccctacc 259  Q
    |||| ||||||||||||||||| ||||| || ||||||||||| |||||||||||||||    
T  12589460 tataaacttctagagcaagagtagttttccctattccaccaatcccatggatccctacc 12589402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 31906042 - 31905788
Alignment:
Q  1 tagaagcaaaagaaccttctttttccggagcctttgttgtattactgaaattccttgtttaacacttgttaactcaatctccttctctccaattatttcc 100  Q
    ||||| |||||||||||| ||||   |||| || || | ||||| ||||||||||||||| ||||||||||||| ||| | ||| |||||||   ||||     
T  31906042 tagaatcaaaagaacctttttttgttggagtctgtgctttattattgaaattccttgtttgacacttgttaacttaattttcttttctccaagggtttct 31905943  T
Q  101 gaaagaatgatcttttggagatatatcaacccatgtttctctgaattttcccgaatgttttcaagaaagcatgaactttcaaattgatggacaatcaaat 200  Q
    |||||||  ||||||||||||| |   ||||| ||||| | ||||||||| |  |  ||||||||||| ||  ||  |||||| |||| | |||||| ||    
T  31905942 gaaagaagaatcttttggagatgttgtaacccgtgtttatttgaattttctctcacattttcaagaaaacacaaagcttcaaagtgatcggcaatcagat 31905843  T
Q  201 tatagacttctagagcaagagttgttttaccaattccaccaattccatggatccc 255  Q
    |||| ||  | |||||||| ||||||||||| || || ||| |||||||||||||    
T  31905842 tataaacagccagagcaagtgttgttttacctatccctccacttccatggatccc 31905788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 35984287 - 35984033
Alignment:
Q  1 tagaagcaaaagaaccttctttttccggagcctttgttgtattactgaaattccttgtttaacacttgttaactcaatctccttctctccaattatttcc 100  Q
    ||||| ||||||||| || |||| | |||| || || | ||| ||||||||||||||||| ||| ||||||||| ||| | ||||||||||| | ||||     
T  35984287 tagaatcaaaagaacttttttttgctggagtctatgctttatcactgaaattccttgtttgacatttgttaacttaattttcttctctccaagtgtttct 35984188  T
Q  101 gaaagaatgatcttttggagatatatcaacccatgtttctctgaattttcccgaatgttttcaagaaagcatgaactttcaaattgatggacaatcaaat 200  Q
    || ||||  ||||||||||||| |   ||||| ||||| ||||||||||| |  | |||||||||||| ||| ||| ||||||    |   |||||||||    
T  35984187 gagagaagaatcttttggagatgttgtaacccgtgtttgtctgaattttctctcacgttttcaagaaaacataaaccttcaaagctgtctgcaatcaaat 35984088  T
Q  201 tatagacttctagagcaagagttgttttaccaattccaccaattccatggatccc 255  Q
    |||| ||  | ||| |||| ||||||||||| || || || ||||||||||||||    
T  35984087 tataaacagccagatcaagtgttgttttacctatcccgccgattccatggatccc 35984033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 99; Significance: 7e-49; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 29469107 - 29468849
Alignment:
Q  1 tagaagcaaaagaaccttctttttccggagcctttgttgtattactgaaattccttgtttaacacttgttaactcaatctccttctctccaattatttcc 100  Q
    |||||||||||||||||||||||   ||| ||||| ||||| || ||||||||||||| ||||||||||||||||||| | ||| |||||||  | ||      
T  29469107 tagaagcaaaagaaccttcttttggtggaaccttttttgtaatattgaaattccttgtctaacacttgttaactcaatgttcttttctccaacaacttga 29469008  T
Q  101 gaaagaatgatcttttggagatatatcaacccatgtttctctgaattttcccgaatgttttcaagaaagcatgaactttcaaattgatggacaatcaaat 200  Q
    || |||| |||||||||||||| ||||||||||| ||| ||||||||||| | ||  ||||||||||| || |||| || |||||||||||||||  |||    
T  29469007 gatagaaggatcttttggagatgtatcaacccatttttgtctgaattttctctaactttttcaagaaaacaggaaccttgaaattgatggacaatggaat 29468908  T
Q  201 tatagacttctagagcaagagttgttttaccaattccaccaattccatggatccctacc 259  Q
    |||| ||| | || ||||| || ||||| || ||||||||||| |||||||||||||||    
T  29468907 tataaactgccagggcaagggtagttttccctattccaccaatcccatggatccctacc 29468849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 28490750 - 28491008
Alignment:
Q  1 tagaagcaaaagaaccttctttttccggagcctttgttgtattactgaaattccttgtttaacacttgttaactcaatctccttctctccaattatttcc 100  Q
    |||||||||||||| ||||||||   ||||||||||| |||  |  ||||||||||||  |||||||||||||||||| | |||||||||||  ||||      
T  28490750 tagaagcaaaagaatcttcttttggtggagcctttgtcgtaacatggaaattccttgtccaacacttgttaactcaatgttcttctctccaaaaatttga 28490849  T
Q  101 gaaagaatgatcttttggagatatatcaacccatgtttctctgaattttcccgaatgttttcaagaaagcatgaactttcaaattgatggacaatcaaat 200  Q
    || | || |||||||||||||||||||||||||| ||| ||||||||||| |  |  ||||||||||| || |||| || |||||||  ||||||  | |    
T  28490850 gacaaaaggatcttttggagatatatcaacccatttttgtctgaattttctcttactttttcaagaaaacaggaaccttgaaattgacagacaatagagt 28490949  T
Q  201 tatagacttctagagcaagagttgttttaccaattccaccaattccatggatccctacc 259  Q
    |||| ||||||||||||||||| ||||| || ||||||||||| |||||||||||||||    
T  28490950 tataaacttctagagcaagagtagttttccctattccaccaatcccatggatccctacc 28491008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 29803160 - 29803418
Alignment:
Q  1 tagaagcaaaagaaccttctttttccggagcctttgttgtattactgaaattccttgtttaacacttgttaactcaatctccttctctccaattatttcc 100  Q
    |||||||||||||| ||||||||   ||||||||||| |||  |  ||||||||||||  |||||||||||||||||| | |||||||||||  ||||      
T  29803160 tagaagcaaaagaatcttcttttggtggagcctttgtcgtaacatggaaattccttgtccaacacttgttaactcaatgttcttctctccaaaaatttga 29803259  T
Q  101 gaaagaatgatcttttggagatatatcaacccatgtttctctgaattttcccgaatgttttcaagaaagcatgaactttcaaattgatggacaatcaaat 200  Q
    || | || |||||||||||||||||||||||||| ||| ||||||||||| |  |  ||||||||||| || |||| || |||||||  ||||||  | |    
T  29803260 gacaaaaggatcttttggagatatatcaacccatttttgtctgaattttctcttactttttcaagaaaacaggaaccttgaaattgacagacaatagagt 29803359  T
Q  201 tatagacttctagagcaagagttgttttaccaattccaccaattccatggatccctacc 259  Q
    |||| ||||||||||||||||| ||||| || ||||||||||| |||||||||||||||    
T  29803360 tataaacttctagagcaagagtagttttccctattccaccaatcccatggatccctacc 29803418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 4 - 262
Target Start/End: Original strand, 29674293 - 29674551
Alignment:
Q  4 aagcaaaagaaccttctttttccggagcctttgttgtattactgaaattccttgtttaacacttgttaactcaatctccttctctccaattatttccgaa 103  Q
    ||||||||||||||||||||   | ||||||| || || || ||||||||||| |  ||||||||||| |||  | | |||||||||||  || |  ||     
T  29674293 aagcaaaagaaccttcttttctggaagccttttttttagtattgaaattccttctccaacacttgttatctctgtgttcttctctccaaaaatatgagat 29674392  T
Q  104 agaatgatcttttggagatatatcaacccatgtttctctgaattttcccgaatgttttcaagaaagcatgaactttcaaattgatggacaatcaaattat 203  Q
    |||| |||||||||||||||||||||||||| ||| || |||||||| | ||  ||||||||||| || |||| ||||||||||  ||||||  ||||||    
T  29674393 agaaggatcttttggagatatatcaacccatttttgtcagaattttctctaactttttcaagaaaacaggaacattcaaattgactgacaattgaattat 29674492  T
Q  204 agacttctagagcaagagttgttttaccaattccaccaattccatggatccctaccttg 262  Q
    | ||||||||||||||||| ||||| || ||||||||||| ||| | ||||||||||||    
T  29674493 aaacttctagagcaagagtggttttccctattccaccaatcccaagaatccctaccttg 29674551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 2 - 255
Target Start/End: Original strand, 29695677 - 29695927
Alignment:
Q  2 agaagcaaaagaaccttctttttccggagcctttgttgtattactgaaattccttgtttaacacttgttaactcaatctccttctctccaattatttccg 101  Q
    ||||| ||||||||||||||||   | ||||||||||||| || ||||| ||||||| ||||||| |||| ||| || | | |||||||||  ||||  |    
T  29695677 agaagtaaaagaaccttcttttggtgaagcctttgttgtaatattgaaactccttgtctaacactggttatctccatgttcgtctctccaacaatttgag 29695776  T
Q  102 aaagaatgatcttttggagatatatcaacccatgtttctctgaattttcccgaatgttttcaagaaagcatgaactttcaaattgatggacaatcaaatt 201  Q
    | |||| |||||||||||||||||||||||||  || || | || | ||  || | ||||||| ||| || |||| || |||||||||||||||| ||||    
T  29695777 acagaaggatcttttggagatatatcaacccactttcct-taaagtctct-gact-ttttcaaaaaaacaggaacattgaaattgatggacaatcgaatt 29695873  T
Q  202 atagacttctagagcaagagttgttttaccaattccaccaattccatggatccc 255  Q
    ||| ||||||||||||||||| ||||| || ||||||||||| |||||||||||    
T  29695874 ataaacttctagagcaagagtagttttccctattccaccaatcccatggatccc 29695927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 101 - 259
Target Start/End: Original strand, 29759755 - 29759913
Alignment:
Q  101 gaaagaatgatcttttggagatatatcaacccatgtttctctgaattttcccgaatgttttcaagaaagcatgaactttcaaattgatggacaatcaaat 200  Q
    ||||||||||| ||||||||||||   ||||||||||| ||   |||||||| ||  ||||||||||| ||||||   ||||||| |||| |||||||||    
T  29759755 gaaagaatgatgttttggagatatggtaacccatgtttttcatgattttccctaacattttcaagaaaacatgaagcatcaaattcatgggcaatcaaat 29759854  T
Q  201 tatagacttctagagcaagagttgttttaccaattccaccaattccatggatccctacc 259  Q
    |||| ||   |||||||||||||||||| ||||||||||| || |||||||||||||||    
T  29759855 tataaacagatagagcaagagttgttttcccaattccacccatcccatggatccctacc 29759913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 2 - 255
Target Start/End: Original strand, 28479660 - 28479910
Alignment:
Q  2 agaagcaaaagaaccttctttttccggagcctttgttgtattactgaaattccttgtttaacacttgttaactcaatctccttctctccaattatttccg 101  Q
    ||||| ||||||||||||||||   | ||||||||||||| ||  |||| ||| ||| |||||||||||| ||| || |   |||||||||  ||||  |    
T  28479660 agaagtaaaagaaccttcttttggtgaagcctttgttgtaatatcgaaactccctgtctaacacttgttatctccatttttgtctctccaacaatttgag 28479759  T
Q  102 aaagaatgatcttttggagatatatcaacccatgtttctctgaattttcccgaatgttttcaagaaagcatgaactttcaaattgatggacaatcaaatt 201  Q
    | |||| |||||||||||||||||||||||||  || || | || | ||  || | ||||||| ||| || |||| |||||||||| |||||||| ||||    
T  28479760 acagaaggatcttttggagatatatcaacccactttcct-taaagtctct-gact-ttttcaaaaaaacaggaacattcaaattgacggacaatcgaatt 28479856  T
Q  202 atagacttctagagcaagagttgttttaccaattccaccaattccatggatccc 255  Q
    ||| ||||||||||||||||| ||||| || ||||||||||| |||||||||||    
T  28479857 ataaacttctagagcaagagtagtttttcctattccaccaatcccatggatccc 28479910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 2 - 255
Target Start/End: Original strand, 29792115 - 29792365
Alignment:
Q  2 agaagcaaaagaaccttctttttccggagcctttgttgtattactgaaattccttgtttaacacttgttaactcaatctccttctctccaattatttccg 101  Q
    ||||| ||||||||||||||||   | ||||||||||||| ||  |||| ||| ||| |||||||||||| ||| || |   |||||||||  ||||  |    
T  29792115 agaagtaaaagaaccttcttttggtgaagcctttgttgtaatatcgaaactccctgtctaacacttgttatctccatttttgtctctccaacaatttgag 29792214  T
Q  102 aaagaatgatcttttggagatatatcaacccatgtttctctgaattttcccgaatgttttcaagaaagcatgaactttcaaattgatggacaatcaaatt 201  Q
    | |||| |||||||||||||||||||||||||  || || | || | ||  || | ||||||| ||| || |||| |||||||||| |||||||| ||||    
T  29792215 acagaaggatcttttggagatatatcaacccactttcct-taaagtctct-gact-ttttcaaaaaaacaggaacattcaaattgacggacaatcgaatt 29792311  T
Q  202 atagacttctagagcaagagttgttttaccaattccaccaattccatggatccc 255  Q
    ||| ||||||||||||||||| ||||| || ||||||||||| |||||||||||    
T  29792312 ataaacttctagagcaagagtagtttttcctattccaccaatcccatggatccc 29792365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 86 - 252
Target Start/End: Complemental strand, 28901505 - 28901339
Alignment:
Q  86 tctccaattatttccgaaagaatgatcttttggagatatatcaacccatgtttctctgaattttcccgaatgttttcaagaaagcatgaactttcaaatt 185  Q
    ||||||| |||||  ||||||| ||| |||||||||| |||||||||||||||||||  |||| | |  |  | ||||||| | || ||||  |||||||    
T  28901505 tctccaaatattttagaaagaaggatattttggagatgtatcaacccatgtttctctttatttcctcttacatcttcaagataacaagaaccatcaaatt 28901406  T
Q  186 gatggacaatcaaattatagacttctagagcaagagttgttttaccaattccaccaattccatggat 252  Q
    ||| ||||||  ||||||| ||| | |||| |||||||||||| || ||||||||| |||| |||||    
T  28901405 gatcgacaattgaattataaactgcaagagaaagagttgttttccctattccaccagttccgtggat 28901339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 174 - 259
Target Start/End: Complemental strand, 26937847 - 26937762
Alignment:
Q  174 aactttcaaattgatggacaatcaaattatagacttctagagcaagagttgttttaccaattccaccaattccatggatccctacc 259  Q
    |||||||||||||||   ||||||||||||| | | || | ||||| |||| |||||||||||| ||||| |||| ||||||||||    
T  26937847 aactttcaaattgatcaccaatcaaattataaattgctcgtgcaagtgttgatttaccaattccgccaatcccatagatccctacc 26937762  T

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Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 192 - 259
Target Start/End: Original strand, 29724731 - 29724798
Alignment:
Q  192 caatcaaattatagacttctagagcaagagttgttttaccaattccaccaattccatggatccctacc 259  Q
    ||||||||||||||||   || || |||||||| ||| || ||||||||||| |||||||||||||||    
T  29724731 caatcaaattatagacagataaagtaagagttgctttccctattccaccaatcccatggatccctacc 29724798  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 248
Target Start/End: Original strand, 29843369 - 29843425
Alignment:
Q  192 caatcaaattatagacttctagagcaagagttgttttaccaattccaccaattccat 248  Q
    ||||||||||||| | | || ||||||| ||||||||||| | ||||||||||||||    
T  29843369 caatcaaattataaattgctcgagcaagtgttgttttacccaatccaccaattccat 29843425  T

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Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 614688 - 614434
Alignment:
Q  1 tagaagcaaaagaaccttctttttccggagcctttgttgtattactgaaattccttgtttaacacttgttaactcaatctccttctctccaattatttcc 100  Q
    |||||||||||||||||||||||   | ||||||| ||||| || | |||||||||||  ||||||||||| |||  | | |||||||||||  ||||      
T  614688 tagaagcaaaagaaccttcttttgttgaagccttttttgtaatattaaaattccttgtccaacacttgttatctctgtgttcttctctccaacaatttga 614589  T
Q  101 gaaagaatgatcttttggagatatatcaacccatgtttctctgaattttcccgaatgttttcaagaaagcatgaactttcaaattgatggacaatcaaat 200  Q
    || | || |||||||||||||| ||||||||||| ||| || |||||||| |  |  ||||||| ||| || |||| || ||||||||| |||||| |||    
T  614588 gacaaaaggatcttttggagatgtatcaacccatttttgtcagaattttctctgactttttcaacaaaacaggaacattgaaattgatgaacaatcgaat 614489  T
Q  201 tatagacttctagagcaagagttgttttaccaattccaccaattccatggatccc 255  Q
    |||| ||||| ||||||||||| ||||| || ||||||||||| ||| |||||||    
T  614488 tataaacttccagagcaagagtagttttccctattccaccaatcccaaggatccc 614434  T

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Target: scaffold0012 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 101 - 259
Target Start/End: Original strand, 239125 - 239283
Alignment:
Q  101 gaaagaatgatcttttggagatatatcaacccatgtttctctgaattttcccgaatgttttcaagaaagcatgaactttcaaattgatggacaatcaaat 200  Q
    |||| |||||| |||||||||||| |||||||||||||||  |||||||| |  |  ||||||| ||| ||||||  |||||| ||||||  ||||||||    
T  239125 gaaataatgattttttggagatatgtcaacccatgtttcttagaattttctctcacattttcaataaaacatgaaacttcaaactgatgggaaatcaaat 239224  T
Q  201 tatagacttctagagcaagagttgttttaccaattccaccaattccatggatccctacc 259  Q
    |||| ||  ||| ||||||||||||||| || ||||||||||| |||||||||||||||    
T  239225 tataaacggctaaagcaagagttgtttttcctattccaccaatcccatggatccctacc 239283  T

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Target: scaffold0012; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 101 - 252
Target Start/End: Original strand, 212433 - 212584
Alignment:
Q  101 gaaagaatgatcttttggagatatatcaacccatgtttctctgaattttcccgaatgttttcaagaaagcatgaactttcaaattgatggacaatcaaat 200  Q
    ||||||||||| ||||||||||||   ||||||||||| ||   |||||| | ||  ||||||||||| ||||||   |||||||||||| |||||||||    
T  212433 gaaagaatgattttttggagatatggtaacccatgtttttcatgattttctctaacattttcaagaaaacatgaaacatcaaattgatgggcaatcaaat 212532  T
Q  201 tatagacttctagagcaagagttgttttaccaattccaccaattccatggat 252  Q
    |||| ||   || ||||||||||||||| || ||||||||||| ||||||||    
T  212533 tatacacagatatagcaagagttgttttccctattccaccaatcccatggat 212584  T

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Target: scaffold0573 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0573
Description:

Target: scaffold0573; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 86 - 252
Target Start/End: Original strand, 8289 - 8455
Alignment:
Q  86 tctccaattatttccgaaagaatgatcttttggagatatatcaacccatgtttctctgaattttcccgaatgttttcaagaaagcatgaactttcaaatt 185  Q
    ||||||| |||||  ||||||| ||| |||||||||| |||||||||||||||||||  |||| | |  |  | ||||||| | || ||||  |||||||    
T  8289 tctccaaatattttagaaagaaggatattttggagatgtatcaacccatgtttctctttatttcctcttacatcttcaagataacaagaaccatcaaatt 8388  T
Q  186 gatggacaatcaaattatagacttctagagcaagagttgttttaccaattccaccaattccatggat 252  Q
    ||| ||||||  ||||||| ||| | |||| |||||||||||| || ||||||||| |||| |||||    
T  8389 gatcgacaattgaattataaactgcaagagaaagagttgttttccctattccaccagttccgtggat 8455  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 255
Target Start/End: Complemental strand, 16691681 - 16691604
Alignment:
Q  178 ttcaaattgatggacaatcaaattatagacttctagagcaagagttgttttaccaattccaccaattccatggatccc 255  Q
    |||||||||||   ||||||||||||| | | || ||||||| ||||||||||| ||||| |||||||||||||||||    
T  16691681 ttcaaattgatcagcaatcaaattataaattgctcgagcaagtgttgttttaccgattcctccaattccatggatccc 16691604  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 254
Target Start/End: Original strand, 19044927 - 19044972
Alignment:
Q  209 tctagagcaagagttgttttaccaattccaccaattccatggatcc 254  Q
    |||||||||||| || ||||||| |||||||||||||||| |||||    
T  19044927 tctagagcaagatttattttacctattccaccaattccattgatcc 19044972  T

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Target: scaffold0007 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 59 - 252
Target Start/End: Complemental strand, 67240 - 67047
Alignment:
Q  59 ttaacacttgttaactcaatctccttctctccaattatttccgaaagaatgatcttttggagatatatcaacccatgtttctctgaattttcccgaatgt 158  Q
    ||||||||||||| | |||| |  || ||||||| |||||  ||||||| ||| ||||| |||| ||||||||| || ||||||  |||| | |  |  |    
T  67240 ttaacacttgttaccacaattttattttctccaaatattttagaaagaaggatattttgaagatgtatcaacccctgattctctttatttcctcttacat 67141  T
Q  159 tttcaagaaagcatgaactttcaaattgatggacaatcaaattatagacttctagagcaagagttgttttaccaattccaccaattccatggat 252  Q
     ||||||| | || ||||  ||||||||||  |||||  ||||||| ||  || |||||||||||||||| || |||||||| |||||||||||    
T  67140 cttcaagataacacgaaccatcaaattgatctacaattgaattataaaccgcttgagcaagagttgttttccctattccaccgattccatggat 67047  T

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