View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16755_low_19 (Length: 321)
Name: NF16755_low_19
Description: NF16755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16755_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 19 - 308
Target Start/End: Complemental strand, 50707687 - 50707398
Alignment:
| Q |
19 |
catcgaacaagcgccgtgataccttttcaaagcgcaaactaggactcttcaacaaagtaacagaattatccattctatgcaatgcaaaaaccgcactgat |
118 |
Q |
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| T |
50707687 |
catcgaacaagcggcgtgataccttttcaaagcgcaaactaggactcttcaacaaagtaacagaattatccattctatgcaatgcaaaaaccgcactgat |
50707588 |
T |
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| Q |
119 |
catcacttctccaaacaaaaatctccatgcatgcggataccctaaccatgacactgtcattaaacactttttcgataaggaaaacccagtcatcaacact |
218 |
Q |
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| T |
50707587 |
catcacttcaccaaacaaaaatctccatgcatgcggataccctaaccatgacactgtcattaaacactttttcgataaggaaaacccagtcatcaacact |
50707488 |
T |
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| Q |
219 |
gaaaaagggaagcaagatgagtacacaattgaaacctcaaggcttcaacatgtgacagttcaagaacggctgaaagaagagaagaataat |
308 |
Q |
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| T |
50707487 |
gaaaaagggaagcaagatgagtacacaattgaaacctcaaggcttcaacatgagacaattcaagaacggctgaaagaagagaagaataat |
50707398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 36 - 301
Target Start/End: Complemental strand, 8167603 - 8167335
Alignment:
| Q |
36 |
gataccttttcaaagcgcaaactaggactcttcaacaaagtaacagaattatccattctatgcaatgcaaaaaccgcactgatcatcacttctccaaaca |
135 |
Q |
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| T |
8167603 |
gataccttctcaaaacgcaaactagggctcttcaacaaagttacagaactatctatcctatgcaatgcaaaaactgcaatgatcatcacttcaccaaacg |
8167504 |
T |
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| Q |
136 |
aaaatctccatgcatgcggataccctaaccatgacactgtcattaaacactttttcgataaggaaaacccagtcatcaacactgaaaaagggaagcaag- |
234 |
Q |
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| T |
8167503 |
gaaaactctacgtttgtggttaccctaaccctaacaccgtcattaaacactttctcgatagggaaaacccagtcatcgacgctgacaaaaggaagcagga |
8167404 |
T |
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| Q |
235 |
--atgagtacacaattgaaacctcaaggcttcaacatgtgacagttcaagaacggctgaaagaagagaa |
301 |
Q |
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| T |
8167403 |
tcatgagggcgtagttgaaaccttaaggtttcaacatgaggcaattgaagaacggctgaaagaagagaa |
8167335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 8999268 - 8999198
Alignment:
| Q |
35 |
tgataccttttcaaagcgcaaactaggactcttcaacaaagtaacagaattatccattctatgcaatgcaa |
105 |
Q |
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| T |
8999268 |
tgataccttctcaaaacgcaaattaggactcttcaacaaagtcacataactattcattttatgcaatgcaa |
8999198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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