View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16755_low_2 (Length: 586)
Name: NF16755_low_2
Description: NF16755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16755_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 133; Significance: 7e-69; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 19 - 227
Target Start/End: Original strand, 41875566 - 41875774
Alignment:
| Q |
19 |
cctgcatacattgttactccgaaaaatgtgtcattttgtaaacttgagaatgttaagaggtacgatggcaaggttaagttttctgagcccaacatacggt |
118 |
Q |
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| T |
41875566 |
cctgcatacgttgttactccaaaaaatgtgccaatttgtaaacttgagaatgttaagaggtatgatggtaaggttaacttttctgaggccaacataaggt |
41875665 |
T |
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| Q |
119 |
caagggaagaagttgcaaataaattatgacgagaaaacggtgctatatttataccttcttctaatgatggccgcatactgaggtagaatgtcgaatgttg |
218 |
Q |
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| T |
41875666 |
caagagatgaagttgcgtatatattacgacaagaaaccggtgctatatttataccttcttctaatgatggccgcatactgaggtagagtgtcgaatgttg |
41875765 |
T |
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| Q |
219 |
attattgtt |
227 |
Q |
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|||| |||| |
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| T |
41875766 |
attaatgtt |
41875774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 219
Target Start/End: Complemental strand, 40868657 - 40868457
Alignment:
| Q |
19 |
cctgcatacattgttactccgaaaaatgtgtcattttgtaaacttgagaatgttaagaggtacgatggcaaggttaagttttctgagcccaacatacggt |
118 |
Q |
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| T |
40868657 |
cctgcatacattgttattcctaaaaatgcgccaacatgtaaaattgagaatgtgaagcggtatggtggtcaggttatctggtctgaggccaatatgcgat |
40868558 |
T |
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| Q |
119 |
caagggaagaagttgcaaataaattatgacgagaaaacggtgctatatttataccttcttctaatgatggccgcatactgaggtagaatgtcgaatgttg |
218 |
Q |
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| T |
40868557 |
caagagaggaaactgcgaataaagtgtggcaagaaactggtgctatttttatacatccttataatgatgggcgcatactgaggtacactgttgaatgttg |
40868458 |
T |
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| Q |
219 |
a |
219 |
Q |
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| T |
40868457 |
a |
40868457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 158 - 207
Target Start/End: Complemental strand, 24817991 - 24817942
Alignment:
| Q |
158 |
gtgctatatttataccttcttctaatgatggccgcatactgaggtagaat |
207 |
Q |
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| T |
24817991 |
gtgctatctatataccttcttcaaatgatggccgcataatgaggtagaat |
24817942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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