View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16755_low_20 (Length: 299)
Name: NF16755_low_20
Description: NF16755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16755_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 15 - 270
Target Start/End: Original strand, 8544092 - 8544357
Alignment:
| Q |
15 |
cacagaaggtaatttaatactccttccttccttcactatttatcattcattca----cttcaacttatgtttattgcttctgcgccaggatcctctatgc |
110 |
Q |
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| T |
8544092 |
cacagaaggtaatttaatactccttcattccttcactatttatcattcattcattcacttcaacttatgtttattgcttctgcgccaggatcttctatgc |
8544191 |
T |
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| Q |
111 |
------aaatgcaaattgtgaaggcactccgctccggtgacagaataaaggcttcccacttactgctccattttgctaatacaaccccccactcattatc |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8544192 |
aaatgcaaatgcaaattgtgaaggcactccgctccggtgacagaataaaggcttcccacttactgctccattttgctaatacaaccccccactcattatc |
8544291 |
T |
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| Q |
205 |
ctccaatcattttcttcctatctttaattactgtttagaatctcctgatccactggtatgtatcta |
270 |
Q |
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| T |
8544292 |
cgccaatcattttcttcctatctttaattactgtttacaatctcctgatccactggtatgtatcta |
8544357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 15 - 270
Target Start/End: Original strand, 8609331 - 8609596
Alignment:
| Q |
15 |
cacagaaggtaatttaatactccttccttccttcactatttatcattcattca----cttcaacttatgtttattgcttctgcgccaggatcctctatgc |
110 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
8609331 |
cacagaaggtaatttaatactccttcattccttcactatttatcattcattcattcacttcaacttatgtttattgcttctgcgccaggatcttctatgc |
8609430 |
T |
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| Q |
111 |
------aaatgcaaattgtgaaggcactccgctccggtgacagaataaaggcttcccacttactgctccattttgctaatacaaccccccactcattatc |
204 |
Q |
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| T |
8609431 |
aaatgcaaatgcaaattgtgaaggcactccgctccggtgacagaataaaggcttcccacttactgctccattttgctaatacaaccccccactcattatc |
8609530 |
T |
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| Q |
205 |
ctccaatcattttcttcctatctttaattactgtttagaatctcctgatccactggtatgtatcta |
270 |
Q |
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| T |
8609531 |
cgccaatcattttcttcctatctttaattactgtttacaatctcctgatccactggtatgtatcta |
8609596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 96 - 168
Target Start/End: Original strand, 25014527 - 25014599
Alignment:
| Q |
96 |
caggatcctctatgcaaatgcaaattgtgaaggcactccgctccggtgacagaataaaggcttcccacttact |
168 |
Q |
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||||||| ||| ||||| ||||||| || |||||||||| ||||||||| |||| |||||||||||||||||| |
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| T |
25014527 |
caggatcgtctgtgcaactgcaaatagtcaaggcactccactccggtgagagaaaaaaggcttcccacttact |
25014599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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