View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16755_low_23 (Length: 274)

Name: NF16755_low_23
Description: NF16755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16755_low_23
NF16755_low_23
[»] chr5 (11 HSPs)
chr5 (15-231)||(1163930-1164146)
chr5 (15-231)||(1849620-1849836)
chr5 (15-219)||(3299149-3299353)
chr5 (15-219)||(3392042-3392246)
chr5 (20-220)||(38987356-38987556)
chr5 (20-214)||(40417946-40418140)
chr5 (66-220)||(39726115-39726269)
chr5 (66-220)||(39879517-39879671)
chr5 (66-212)||(39168603-39168749)
chr5 (66-197)||(39399601-39399735)
chr5 (54-220)||(40596325-40596485)
[»] chr4 (1 HSPs)
chr4 (15-204)||(25912538-25912727)


Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 15 - 231
Target Start/End: Complemental strand, 1164146 - 1163930
Alignment:
Q  15 gattattctgcctagtaatattgctgcttctttaggtccaaatattggtcctattgttatttgtactagggttgccaaaacatttactttgcttgatcca 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1164146 gattattctgcctagtaatattgctgcttctttaggtccaaatattggtcctattgttatttgtactagggttgccaaaacatttactttgcttgatcca 1164047  T
Q  115 tttaccttgacccactgtttcttaaaggctggtcaatactgggatgcacccttcacgccttcattctctaggcctcagttagtggaatatgctgttctcg 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1164046 tttaccttgacccactgtttcttaaaggctggtcaatactgggatgcacccttcacgccttcattctctaggcctcagttagtggaatatgctgttctcg 1163947  T
Q  215 gtattgagaaattagat 231  Q
    |||||||||||||||||    
T  1163946 gtattgagaaattagat 1163930  T

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Target: chr5; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 15 - 231
Target Start/End: Original strand, 1849620 - 1849836
Alignment:
Q  15 gattattctgcctagtaatattgctgcttctttaggtccaaatattggtcctattgttatttgtactagggttgccaaaacatttactttgcttgatcca 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  1849620 gattattctgcctagtaatattgctgcttctttaggtccaaatattggtcctattgttatttgtactagggttgccagaacatttactttgcttgatcca 1849719  T
Q  115 tttaccttgacccactgtttcttaaaggctggtcaatactgggatgcacccttcacgccttcattctctaggcctcagttagtggaatatgctgttctcg 214  Q
    ||||||||||||| ||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  1849720 tttaccttgacccgctgtttcttaaaggctgatcgttactgggatgcacccttcacgccttcattctctaggcatcagttagtggaatatgttgttctcg 1849819  T
Q  215 gtattgagaaattagat 231  Q
    |||| ||||||||||||    
T  1849820 gtatcgagaaattagat 1849836  T

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Target: chr5; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 15 - 219
Target Start/End: Original strand, 3299149 - 3299353
Alignment:
Q  15 gattattctgcctagtaatattgctgcttctttaggtccaaatattggtcctattgttatttgtactagggttgccaaaacatttactttgcttgatcca 114  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  3299149 gattattctgcctagtcatattgctgcttctttcggtccaaatattggtcctattgtcatttgtactagggttgccaaaatatttactttgcttgatcca 3299248  T
Q  115 tttaccttgacccactgtttcttaaaggctggtcaatactgggatgcacccttcacgccttcattctctaggcctcagttagtggaatatgctgttctcg 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3299249 tttaccttgacccactgtttcttaaaggctggtcaatactgggatgcacccttcacgccttcattctctaggcctcagttagtggaatatgttgttctcg 3299348  T
Q  215 gtatt 219  Q
    |||||    
T  3299349 gtatt 3299353  T

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Target: chr5; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 15 - 219
Target Start/End: Original strand, 3392042 - 3392246
Alignment:
Q  15 gattattctgcctagtaatattgctgcttctttaggtccaaatattggtcctattgttatttgtactagggttgccaaaacatttactttgcttgatcca 114  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  3392042 gattattctgcctagtcatattgctgcttctttcggtccaaatattggtcctattgtcatttgtactagggttgccaaaatatttactttgcttgatcca 3392141  T
Q  115 tttaccttgacccactgtttcttaaaggctggtcaatactgggatgcacccttcacgccttcattctctaggcctcagttagtggaatatgctgttctcg 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3392142 tttaccttgacccactgtttcttaaaggctggtcaatactgggatgcacccttcacgccttcattctctaggcctcagttagtggaatatgttgttctcg 3392241  T
Q  215 gtatt 219  Q
    |||||    
T  3392242 gtatt 3392246  T

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Target: chr5; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 20 - 220
Target Start/End: Original strand, 38987356 - 38987556
Alignment:
Q  20 ttctgcctagtaatattgctgcttctttaggtccaaatattggtcctattgttatttgtactagggttgccaaaacatttactttgcttgatccatttac 119  Q
    ||||||||  |||| ||| ||||||||| ||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||    
T  38987356 ttctgcctcctaatgttgttgcttctttgggtccaaatattggtcctattgtcatatgcactagggttgccaaaacatttactttgcttgatccatttac 38987455  T
Q  120 cttgacccactgtttcttaaaggctggtcaatactgggatgcacccttcacgccttcattctctaggcctcagttagtggaatatgctgttctcggtatt 219  Q
    ||||||||||||||||||| | |||  ||| |||||| | ||||| ||||| | |||||||  |||| |||||||||| ||||||| |||||||| ||||    
T  38987456 cttgacccactgtttcttagatgctcatcagtactggaaagcaccattcacacattcattcaataggactcagttagtcgaatatgttgttctcgatatt 38987555  T
Q  220 g 220  Q
    |    
T  38987556 g 38987556  T

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Target: chr5; HSP #6
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 20 - 214
Target Start/End: Original strand, 40417946 - 40418140
Alignment:
Q  20 ttctgcctagtaatattgctgcttctttaggtccaaatattggtcctattgttatttgtactagggttgccaaaacatttactttgcttgatccatttac 119  Q
    ||||||||  |||| ||| ||||||||| |||  |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  40417946 ttctgcctcctaatgttgttgcttctttcggtgaaaatattggtcctattgtcatttgcactagggttgccaaaacatttactttgcttgatccatttac 40418045  T
Q  120 cttgacccactgtttcttaaaggctggtcaatactgggatgcacccttcacgccttcattctctaggcctcagttagtggaatatgctgttctcg 214  Q
    ||||||||||||||||||| | |||  ||| |||||| | ||||| ||||| | |||||||  |||| |||||||||| ||||||| ||||||||    
T  40418046 cttgacccactgtttcttagatgctcatcagtactggaaagcaccattcacacattcattcaataggactcagttagtcgaatatgttgttctcg 40418140  T

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Target: chr5; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 66 - 220
Target Start/End: Original strand, 39726115 - 39726269
Alignment:
Q  66 tattgttatttgtactagggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttaaaggctggtcaatactgggatgcaccc 165  Q
    |||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||  ||| |||||| | |||||     
T  39726115 tattgtcatatgcactagggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttagatgctcatcagtactggaaagcacca 39726214  T
Q  166 ttcacgccttcattctctaggcctcagttagtggaatatgctgttctcggtattg 220  Q
    ||||| | |||||||  |||| |||||||||| ||||||| |||||||| |||||    
T  39726215 ttcacacattcattcaataggactcagttagtcgaatatgttgttctcgatattg 39726269  T

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Target: chr5; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 66 - 220
Target Start/End: Original strand, 39879517 - 39879671
Alignment:
Q  66 tattgttatttgtactagggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttaaaggctggtcaatactgggatgcaccc 165  Q
    |||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||  ||| |||||| | |||||     
T  39879517 tattgtcatatgcactagggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttagatgctcatcagtactggaaagcacca 39879616  T
Q  166 ttcacgccttcattctctaggcctcagttagtggaatatgctgttctcggtattg 220  Q
    ||||| | |||||||  |||| |||||||||| ||||||| |||||||| |||||    
T  39879617 ttcacacattcattcaataggactcagttagtcgaatatgttgttctcgatattg 39879671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 66 - 212
Target Start/End: Original strand, 39168603 - 39168749
Alignment:
Q  66 tattgttatttgtactagggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttaaaggctggtcaatactgggatgcaccc 165  Q
    ||||||||| || |||||||||||||||| | ||||||| ||||||||||||||||||||    | || ||||||||||| | | |||||| ||||||||    
T  39168603 tattgttatatgcactagggttgccaaaaaaattactttacttgatccatttaccttgactgctttttccttaaaggctgatgagtactggaatgcaccc 39168702  T
Q  166 ttcacgccttcattctctaggcctcagttagtggaatatgctgttct 212  Q
    ||||||| ||||||| ||||| ||||||||||| |||||| ||||||    
T  39168703 ttcacgcattcattcactaggactcagttagtgaaatatgttgttct 39168749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 66 - 197
Target Start/End: Original strand, 39399601 - 39399735
Alignment:
Q  66 tattgttatttgtactagggttgccaaaacatttact---ttgcttgatccatttaccttgacccactgtttcttaaaggctggtcaatactgggatgca 162  Q
    |||||| || || |||||||||||||||| | |||||   ||||||||||||||||||||||||   | || ||||||||||| ||| |||||| |||||    
T  39399601 tattgtcatatgcactagggttgccaaaaaaattactactttgcttgatccatttaccttgaccgctttttccttaaaggctgatcactactggaatgca 39399700  T
Q  163 cccttcacgccttcattctctaggcctcagttagt 197  Q
    || ||||||| |||||||  |||| ||||||||||    
T  39399701 cctttcacgcattcattcaataggactcagttagt 39399735  T

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Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 220
Target Start/End: Original strand, 40596325 - 40596485
Alignment:
Q  54 aaatattggtcctattgttatttgtactagggttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttaaaggctggtcaatac 153  Q
    ||||||| |||||||| | |||||||    |||||| |||| | ||||||||||||||   || |||||||   ||||| ||||||| | || ||| |||    
T  40596325 aaatattagtcctattatcatttgta----ggttgctaaaagaattactttgcttgatt--ttcaccttgaggtactgtatcttaaatgttgatcagtac 40596418  T
Q  154 tgggatgcacccttcacgccttcattctctaggcctcagttagtggaatatgctgttctcggtattg 220  Q
    ||| ||||||  |||||||||||| || |||||  |||||||||||||||| |||| |||| |||||    
T  40596419 tggaatgcacttttcacgccttcactcactaggagtcagttagtggaatattctgtgctcgatattg 40596485  T

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Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 15 - 204
Target Start/End: Complemental strand, 25912727 - 25912538
Alignment:
Q  15 gattattctgcctagtaatattgctgcttctttaggtccaaatattggtcctattgttatttgtactagggttgccaaaacatttactttgcttgatcca 114  Q
    |||| ||||||||  |||| |||||||||||||  ||  |||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||    
T  25912727 gatttttctgcctcctaatgttgctgcttctttcagtgtaaatattggtcctattgtcatttgcactagggttgccaaaacatttactttacttgatcca 25912628  T
Q  115 tttaccttgacccactgtttcttaaaggctggtcaatactgggatgcacccttcacgccttcattctctaggcctcagttagtggaatat 204  Q
    ||||||||||| || |||||||| ||||||| ||| |||||| |||||||||||||||||| |||| |||||||||||||||| ||||||    
T  25912627 tttaccttgactcattgtttcttgaaggctgatcagtactggaatgcacccttcacgccttaattcactaggcctcagttagttgaatat 25912538  T

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