View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16755_low_27 (Length: 257)
Name: NF16755_low_27
Description: NF16755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16755_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 237
Target Start/End: Complemental strand, 11887302 - 11887084
Alignment:
| Q |
19 |
cacagattgtgaagcagtagaatgacaggaacaagcattgcagcgagtggaatagttcttgaaccactgaccaaagacaactacgaaaactggagctgtc |
118 |
Q |
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| T |
11887302 |
cacagattgtgaagcagtagaatgacaggaacaagcattgcagcgagtggaatagttcttgaaccactgaccaaagacaactacgaaaactggagctgtc |
11887203 |
T |
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| Q |
119 |
tggttagaaactatcttgtgggacatggtctgtggggtgttgtgacctctattcctgaaattggtgcgcgttctaagaccgaatatgagatttggaacag |
218 |
Q |
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| T |
11887202 |
tggttagaaactatcttgtgggacatggtctgtggggtgttgtgacctctattcctgaaattggtgcgcgttctaagatcgaatatgagatttggaacag |
11887103 |
T |
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| Q |
219 |
gaagaatgggaaggctttg |
237 |
Q |
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| T |
11887102 |
gaagaatgggaaggctttg |
11887084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 50 - 163
Target Start/End: Complemental strand, 11816676 - 11816563
Alignment:
| Q |
50 |
caagcattgcagcgagtggaatagttcttgaaccactgaccaaagacaactacgaaaactggagctgtctggttagaaactatcttgtgggacatggtct |
149 |
Q |
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| T |
11816676 |
caagcattgcagcaagtggaatagttcttgaaccactaacaaaagacaactacgataattggagctgtttggtgagaaactatcttgcagggcatgatct |
11816577 |
T |
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| Q |
150 |
gtggggtgttgtga |
163 |
Q |
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| T |
11816576 |
gtggggagttgtga |
11816563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 53 - 161
Target Start/End: Complemental strand, 11776681 - 11776573
Alignment:
| Q |
53 |
gcattgcagcgagtggaatagttcttgaaccactgaccaaagacaactacgaaaactggagctgtctggttagaaactatcttgtgggacatggtctgtg |
152 |
Q |
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| T |
11776681 |
gcattgcagctagtggaatagttcttgaaccactaacaagagacaactacgataactggagctgtttggtgaaaaactatcttgtggggcatgatctgtg |
11776582 |
T |
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| Q |
153 |
gggtgttgt |
161 |
Q |
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| T |
11776581 |
gggcgttgt |
11776573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 50 - 164
Target Start/End: Complemental strand, 11841988 - 11841874
Alignment:
| Q |
50 |
caagcattgcagcgagtggaatagttcttgaaccactgaccaaagacaactacgaaaactggagctgtctggttagaaactatcttgtgggacatggtct |
149 |
Q |
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| T |
11841988 |
caagcatttcagcaaatgcaatagttcttgaaccactaacaaaagacaactacgataactggagctgtttggtgagaaactatcttgaggggcatgatct |
11841889 |
T |
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| Q |
150 |
gtggggtgttgtgac |
164 |
Q |
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| T |
11841888 |
gtggggagttgtgac |
11841874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 69 - 176
Target Start/End: Original strand, 11739970 - 11740077
Alignment:
| Q |
69 |
aatagttcttgaaccactgaccaaagacaactacgaaaactggagctgtctggttagaaactatcttgtgggacatggtctgtggggtgttgtgacctct |
168 |
Q |
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||||||| ||||||||||||| ||||||||||| || |||||||||||||||| ||||| ||||| | || || | ||||||||| ||||||| ||| |
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| T |
11739970 |
aatagtttttgaaccactgacgaaagacaactatgattactggagctgtctggtgagaaattatctattagggcaagatctgtgggggtttgtgacttct |
11740069 |
T |
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| Q |
169 |
attcctga |
176 |
Q |
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||| |||| |
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| T |
11740070 |
atttctga |
11740077 |
T |
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