View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16755_low_29 (Length: 252)
Name: NF16755_low_29
Description: NF16755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16755_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 153 - 249
Target Start/End: Complemental strand, 8544780 - 8544684
Alignment:
| Q |
153 |
aatttgtgttgttgagagtaatatatgttttaatatgcacattgcacacctggagaagcgcagtataggtaacttcattcttccctatcatcttctt |
249 |
Q |
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| T |
8544780 |
aatttgtgttgttgagagtaatatatgttttaatatgcacattgcacacctggagaagcgcagtataggttacttcattcttccctatcatcttctt |
8544684 |
T |
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Target: chr1; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 153 - 249
Target Start/End: Complemental strand, 8610019 - 8609923
Alignment:
| Q |
153 |
aatttgtgttgttgagagtaatatatgttttaatatgcacattgcacacctggagaagcgcagtataggtaacttcattcttccctatcatcttctt |
249 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
8610019 |
aatttgtgttgttgagagtaatatatgttttaatatgcacattgcacacctggagaagcgcagtataggttacttcattcttccctatcatcttctt |
8609923 |
T |
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