View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16755_low_30 (Length: 250)
Name: NF16755_low_30
Description: NF16755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16755_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 26464248 - 26464017
Alignment:
| Q |
1 |
ttgtccattataataggatatttggaactgatataggatacaggaagttgaaagcattaaagaacactgaagttgaatacagtagcgaacaaaagaaaca |
100 |
Q |
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| T |
26464248 |
ttgtccattataataggatatttggaactgatataggatacagaaagttgaaagcattaaagaacgctgaagttgaatacagtagcgaacaaaagaaaca |
26464149 |
T |
|
| Q |
101 |
gtgaggaagggaacagattgtagatatctagaaccattgaaaaggttgatttccaaacttaagggaaattttgaaaattgtcttgtcttattctgtaatt |
200 |
Q |
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| T |
26464148 |
gtgaggaagggaacagattgtagatatctagaaccattgaaaaggttgatttccaaaattaagggaaattttgaaaattgtcttgtcttgttctgtaatt |
26464049 |
T |
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| Q |
201 |
tggtagctgttattgtcaacaacatatcgatt |
232 |
Q |
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||||||||||||||||| ||||||||| |||| |
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| T |
26464048 |
tggtagctgttattgtcgacaacatatggatt |
26464017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 14368683 - 14368451
Alignment:
| Q |
1 |
ttgtccattataataggatatttggaactgatataggatacaggaagttgaaagcattaaagaacactgaagttgaatacagtagcgaacaaaagaaaca |
100 |
Q |
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| T |
14368683 |
ttgtccattataataggatatttggaactgatataggatacagaaagttgaaagcattaaagaacactggagttgaatacagtagcgaacaaatgaatca |
14368584 |
T |
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| Q |
101 |
gtgaggaagggaacagattgtagatatctagaaccattgaaaaggttgatttccaaac-ttaagggaaattttgaaaattgtcttgtcttattctgtaat |
199 |
Q |
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| T |
14368583 |
gtgaggaagggaacaaattgtagatatctagaaccattgaaaaggttgattaccaaactttaagggaatttttgaaaattgtcttgtcttgttgtgtaat |
14368484 |
T |
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| Q |
200 |
ttggtagctgttattgtcaacaacatatcgatt |
232 |
Q |
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| T |
14368483 |
ttggtagctgttattgtcgacaacatatggatt |
14368451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 100
Target Start/End: Original strand, 15316837 - 15316923
Alignment:
| Q |
14 |
taggatatttggaactgatataggatacaggaagttgaaagcattaaagaacactgaagttgaatacagtagcgaacaaaagaaaca |
100 |
Q |
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||||||||||||||||||| |||||||||| ||||| |||||||| |||| || ||| ||||| ||||| ||| ||||||||||| |
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| T |
15316837 |
taggatatttggaactgatgtaggatacagaaagttaaaagcattgaagagcagagaatttgaagacagttacgagcaaaagaaaca |
15316923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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