View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16755_low_31 (Length: 250)
Name: NF16755_low_31
Description: NF16755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16755_low_31 |
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| [»] chr7 (2 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 20 - 250
Target Start/End: Original strand, 17488033 - 17488267
Alignment:
| Q |
20 |
tattttgatgttaggtcccctcaaggatcctaatgaagcgtaaataaactaatcacgttgttaaaatattagtgttgtgtatactttgaaaaatcaacga |
119 |
Q |
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| T |
17488033 |
tattttgatgttaggtcccctcaaggatcctaatgaagcgtaaataaactaatcatgttgttaaaatattagtgttgtgtatactttgaaaaatcaacga |
17488132 |
T |
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| Q |
120 |
ccttacctcaagggattaacaattaaaatgttttcaaatttcaatagaaaccattgttg----tttatttatttaattattttgaaaaaagagagataat |
215 |
Q |
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| T |
17488133 |
ccttacctcaagggattaacaattaaaatgttttcaaatttcaatagaaaccattgttgtttatttatttatttaattattttgaaaaaagagagataat |
17488232 |
T |
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| Q |
216 |
taggttaattgaagagattccaattggtatatcaa |
250 |
Q |
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| T |
17488233 |
taggttaattgaagagattccaattggtatatcaa |
17488267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 20 - 250
Target Start/End: Complemental strand, 17565181 - 17564947
Alignment:
| Q |
20 |
tattttgatgttaggtcccctcaaggatcctaatgaagcgtaaataaactaatcacgttgttaaaatattagtgttgtgtatactttgaaaaatcaacga |
119 |
Q |
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| T |
17565181 |
tattttgatgttaggtcccctcaaggatcctaatgaagcgtaaataaactaatcatgttgttaaaatattagtgttgtgtatactttgaaaaatcaacga |
17565082 |
T |
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| Q |
120 |
ccttacctcaagggattaacaattaaaatgttttcaaatttcaatagaaaccattgttgtttattta----tttaattattttgaaaaaagagagataat |
215 |
Q |
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| T |
17565081 |
ccttacctcaagggattaacaattaaaatgttttcaaatttcaatagaaaccattgttgtttatttatttatttaattattttgaaaaaagagagataat |
17564982 |
T |
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| Q |
216 |
taggttaattgaagagattccaattggtatatcaa |
250 |
Q |
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| T |
17564981 |
taggttaattgaagagattccaattggtatatcaa |
17564947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 8 - 250
Target Start/End: Original strand, 1916347 - 1916593
Alignment:
| Q |
8 |
ccaataatatgctattttgatgttaggtcccctcaaggatcctaatgaagcgtaaataaactaatcacgttgttaaaatattagtgttgtgtatactttg |
107 |
Q |
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| T |
1916347 |
ccaataatatgatattttgatgttaggtcccctcaagggccctaatgaagtgtaaataaactaatcatgttgttaaaatattagtgttgtgtatactttg |
1916446 |
T |
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| Q |
108 |
aaaaatcaacgaccttacctcaagggattaacaattaaaatgttttcaaatttcaatagaaaccattgttgttt----atttatttaattattttgaaaa |
203 |
Q |
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| T |
1916447 |
aaaaatcaacgaccttaccttaagggattaaaaattaaaatgttttcaaatttcaatagaaaccattgttgtttattcatttatttaattattttgaaaa |
1916546 |
T |
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| Q |
204 |
aagagagataattaggttaattgaagagattccaattggtatatcaa |
250 |
Q |
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| T |
1916547 |
aagagagataattaggttaattgaagagattccaattggtatatcaa |
1916593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 77 - 181
Target Start/End: Complemental strand, 23230035 - 23229938
Alignment:
| Q |
77 |
ttgttaaaatattagtgttgtgtatactttgaaaaatcaacgaccttacctcaagggattaacaattaaaatgttttcaaatttcaatagaaaccattgt |
176 |
Q |
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| T |
23230035 |
ttgttgaaatattggtgttgtgtatactttgaaaaatcaacgactttgcctcaaggga-------ttaaaatgttttcaaatttcaacagaaaccattgt |
23229943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 181
Target Start/End: Original strand, 12468035 - 12468076
Alignment:
| Q |
140 |
aattaaaatgttttcaaatttcaatagaaaccattgttgttt |
181 |
Q |
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| T |
12468035 |
aattaaaatgttttcaaatttcatcaaaaaccattgttgttt |
12468076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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