View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16755_low_37 (Length: 215)
Name: NF16755_low_37
Description: NF16755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16755_low_37 |
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| [»] chr6 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 15 - 215
Target Start/End: Original strand, 14368274 - 14368474
Alignment:
| Q |
15 |
agaacaatattaaagctcaaattgggagaggtatctaacatgcatatgaatcgtctctttcatttcattcaactggtttaaatccaaaatagtcggtgtt |
114 |
Q |
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| T |
14368274 |
agaacaatattaaagctcaaattgggagaggtatctaacatgcatatgaatcgtctctttcatttcattcaactggtttaaatccaaaatagtcactgtt |
14368373 |
T |
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| Q |
115 |
tgccaagaaagaattggaatcaacaaaatagatgcacaataaacttttctagattatagggtatgcatgtccaaaacaatcgatatgttgttgacaataa |
214 |
Q |
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| T |
14368374 |
tgccaagaaagaattgtaatcaacaaaatagatgcacaataaacttttctagattaaagggcatgcatgtccaaaacaatccatatgttgtcgacaataa |
14368473 |
T |
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| Q |
215 |
c |
215 |
Q |
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| T |
14368474 |
c |
14368474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 12 - 215
Target Start/End: Original strand, 26463837 - 26464040
Alignment:
| Q |
12 |
cacagaacaatattaaagctcaaattgggagaggtatctaacatgcatatgaatcgtctctttcatttcattcaactggtttaaatccaaaatagtcggt |
111 |
Q |
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|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
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| T |
26463837 |
cacataacaatattaaagctcaaattgagagaggtatctaacatgcatatgaatcgtctctttcatttcattcaactggtttaaatctaaaatagtcagt |
26463936 |
T |
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| Q |
112 |
gtttgccaagaaagaattggaatcaacaaaatagatgcacaataaacttttctagattatagggtatgcatgtccaaaacaatcgatatgttgttgacaa |
211 |
Q |
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| T |
26463937 |
gtttgccaagaaagaattggaatcaacaaaatagatgcacaataaacttttctagattccagggcatgcatgtccaaaacaatccatatgttgtcgacaa |
26464036 |
T |
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| Q |
212 |
taac |
215 |
Q |
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| T |
26464037 |
taac |
26464040 |
T |
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