View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16755_low_38 (Length: 215)
Name: NF16755_low_38
Description: NF16755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16755_low_38 |
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Alignment Details
Target: chr2 (Bit Score: 150; Significance: 2e-79; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 47 - 196
Target Start/End: Complemental strand, 16102911 - 16102762
Alignment:
| Q |
47 |
gatacaatgcacaaatctttttatcgaactataagtaccatgtcaaaatcacactgaagttccaaccctcagaaagaaaaagaaaatataaggcaaagta |
146 |
Q |
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| T |
16102911 |
gatacaatgcacaaatctttttatcgaactataagtaccatgtcaaaatcacactgaagttccaaccctcagaaagaaaaagaaaatataaggcaaagta |
16102812 |
T |
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| Q |
147 |
taattctattatctaaaatggtgaatcaaatgtcaaattacctcctctct |
196 |
Q |
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| T |
16102811 |
taattctattatctaaaatggtgaatcaaatgtcaaattacctcctctct |
16102762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 47 - 195
Target Start/End: Complemental strand, 16138583 - 16138431
Alignment:
| Q |
47 |
gatacaatgcac-aaatctttttatcgaactataagtaccatgtcaaaatcacactgaagttccaaccctcagaaagaaaaagaaaatataaggcaaagt |
145 |
Q |
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| T |
16138583 |
gatacaatggactaaaactttttattgatctataaatatcatgtcaaaaccacacttaagatccatcccacagaaagaaaaagaaaatataaggcaaagt |
16138484 |
T |
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| Q |
146 |
ataattc---tattatctaaaatggtgaatcaaatgtcaaattacctcctctc |
195 |
Q |
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| T |
16138483 |
aattttctagtattatctaaaatggtgagccaaatgtcaagttatcttctctc |
16138431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 146
Target Start/End: Complemental strand, 16109743 - 16109701
Alignment:
| Q |
104 |
agttccaaccctcagaaagaaaaagaaaatataaggcaaagta |
146 |
Q |
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| T |
16109743 |
agttccaacccttggaaagaaaaggaaaatataaggcaaagta |
16109701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 146
Target Start/End: Original strand, 16325824 - 16325866
Alignment:
| Q |
104 |
agttccaaccctcagaaagaaaaagaaaatataaggcaaagta |
146 |
Q |
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| T |
16325824 |
agttccaacccttgaaaagaaaaagaaaatataaggcaaagta |
16325866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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