View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16755_low_5 (Length: 455)
Name: NF16755_low_5
Description: NF16755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16755_low_5 |
 | |
|
| [»] scaffold0183 (2 HSPs) |
| | |
|
| [»] scaffold0401 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 424; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Original strand, 13778515 - 13778954
Alignment:
| Q |
1 |
aattactgaggacgagggagatttcactgaagagatggcggttcacaaaccactgtgctcttatgttatggatagtggttgtgtcgaaggtgaacaggca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13778515 |
aattactgaggacgagggagatttcactcaagagatggcggttcacaaaccactgtgctattatgttatggatagtggttgtgtcgaaggtgaacaggca |
13778614 |
T |
|
| Q |
101 |
atgtttgagaaacttgatcatcacatgaaaagtcatcttaagcctttgtttatccaagctaaaatcaataatgttgggattaacaaagtgctcatcgatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13778615 |
atgtttgagaaacttgatcatcacatgaaaagtcatcttaagcctttgtttatccaagctaaaatcaataatgttgggattaacaaagtgctcatcgatg |
13778714 |
T |
|
| Q |
201 |
gtggtgctgctgtaaatttgttgccacagtttctcttaaaaaagattggtttgtcagagtccgacctgaaaccacacattatcatactttccaactatga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
13778715 |
gtggtgctgctgtaaatttgttgccacagtttctcttaaaaaagattggtttgtcagagtccgacctcaaaccacacattatcatactttccaactatga |
13778814 |
T |
|
| Q |
301 |
aggaaagtctggaattcctttggagctgtggaagtcgacttggtggtaggtactgtgaaaagatcaacacttttccgggtggttgcttctaaagccaact |
400 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13778815 |
aggaaagtctggaattcctttagagctgtggaagtcgacttggtggtaggtactgtgaaaagatcaacacttttccgggtggttgcttctaaagccaact |
13778914 |
T |
|
| Q |
401 |
acaatttactcatgggaagggaatggatacatgttgacgg |
440 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13778915 |
acaatttactcatgggaagggaatggatacatgttgacgg |
13778954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 225
Target Start/End: Complemental strand, 20246793 - 20246701
Alignment:
| Q |
133 |
tcatcttaagcctttgtttatccaagctaaaatcaataatgttgggattaacaaagtgctcatcgatggtggtgctgctgtaaatttgttgcc |
225 |
Q |
| |
|
||||||||| ||||||| |||||||| ||| | || | |||| || ||||||||| | |||||||||||||||||||||||||| |||| |
|
|
| T |
20246793 |
tcatcttaaaactttgttcatccaagccaaagtggatgagattggtatcaacaaagtgttggtcgatggtggtgctgctgtaaatttgatgcc |
20246701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 225
Target Start/End: Complemental strand, 22140777 - 22140685
Alignment:
| Q |
133 |
tcatcttaagcctttgtttatccaagctaaaatcaataatgttgggattaacaaagtgctcatcgatggtggtgctgctgtaaatttgttgcc |
225 |
Q |
| |
|
||||||||| ||||||| |||||||| ||| | || | |||| || ||||||||| | |||||||||||||||||||||||||| |||| |
|
|
| T |
22140777 |
tcatcttaaaactttgttcatccaagccaaagtggatgagattggtatcaacaaagtgttggtcgatggtggtgctgctgtaaatttgatgcc |
22140685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0183 (Bit Score: 172; Significance: 3e-92; HSPs: 2)
Name: scaffold0183
Description:
Target: scaffold0183; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 33 - 407
Target Start/End: Complemental strand, 12937 - 12563
Alignment:
| Q |
33 |
agatggcggttcacaaaccactgtgctcttatgttatggatagtggttgtgtcgaaggtgaacaggcaatgtttgagaaacttgatcatcacatgaaaag |
132 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||||||||| ||||||||| |||||||||| |||||||||||||||| ||||||| |||||||||| |
|
|
| T |
12937 |
agatggcggttcacaaaccactatgctattatgttatggataacggttgtgtcaaaggtgaacatgcaatgtttgagaaacctgatcattacatgaaaag |
12838 |
T |
|
| Q |
133 |
tcatcttaagcctttgtttatccaagctaaaatcaataatgttgggattaacaaagtgctcatcgatggtggtgctgctgtaaatttgttgccacagttt |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||||| |||||||| | || ||||||| || ||||||||||||| ||||| ||||| |
|
|
| T |
12837 |
tcatcttaagcctttgtttatccaagctaaaatcaatgatattgggatcaacaaagtacgtattgatggtgttgttgctgtaaatttgctgccatagttt |
12738 |
T |
|
| Q |
233 |
ctcttaaaaaagattggtttgtcagagtccgacctgaaaccacacattatcatactttccaactatgaaggaaagtctggaa-ttcctttggagctgtgg |
331 |
Q |
| |
|
|||| ||||||||||||||||||| || || |||||||||||| | || | |||| || ||||||||||| ||| ||| ||| ||||||||||| | |
|
|
| T |
12737 |
ttctt-gaaaagattggtttgtcagaatctgatttgaaaccacacaatgtcgttttttctaattatgaaggaaattctagaagttcttttggagctgtcg |
12639 |
T |
|
| Q |
332 |
aagtcgacttggtggtaggtactgtgaaaagatcaacacttttccgggtggttgcttctaaagccaactacaattt |
407 |
Q |
| |
|
|||| |||||||||||||| | | | ||||||||||||||||||| ||| ||| |||| ||||| ||||| ||||| |
|
|
| T |
12638 |
aagttgacttggtggtagggattattaaaagatcaacacttttcctggtagtttcttcgaaagctaactataattt |
12563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0183; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 14552 - 14515
Alignment:
| Q |
1 |
aattactgaggacgagggagatttcactgaagagatgg |
38 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
14552 |
aattactgaagacgagggagatttcactaaagagatgg |
14515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 89; Significance: 1e-42; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 15 - 175
Target Start/End: Complemental strand, 24970068 - 24969908
Alignment:
| Q |
15 |
agggagatttcactgaagagatggcggttcacaaaccactgtgctcttatgttatggatagtggttgtgtcgaaggtgaacaggcaatgtttgagaaact |
114 |
Q |
| |
|
|||||||||||||||| || ||| | ||||| ||||||||||||| ||| |||||||| | ||||||||||||||||||||| || |||||| |||||| |
|
|
| T |
24970068 |
agggagatttcactgaggaaatgactgttcataaaccactgtgctattacgttatggacaatggttgtgtcgaaggtgaacaagccatgtttaagaaacc |
24969969 |
T |
|
| Q |
115 |
tgatcatcacatgaaaagtcatcttaagcctttgtttatccaagctaaaatcaataatgtt |
175 |
Q |
| |
|
| |||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||| |
|
|
| T |
24969968 |
taatcatcacatgaaaagtcatctcaagcccatgtttatccaagctaaaatcaacaatgtt |
24969908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 104 - 234
Target Start/End: Complemental strand, 24969766 - 24969635
Alignment:
| Q |
104 |
tttgagaaacttgatcatcacatgaaaagtcatcttaagcctttgtttatccaagctaaaatcaataatgttgggattaa-caaagtgctcatcgatggt |
202 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||| || | |||||||||||||||||||||| ||||||||| ||| ||| ||||| ||||| || |
|
|
| T |
24969766 |
tttgagaaacctaatcatcacatgaaaagtcatctcaaactcatgtttatccaagctaaaatcaacaatgttgggggtaaacaatgtgcttgtcgattgt |
24969667 |
T |
|
| Q |
203 |
ggtgctgctgtaaatttgttgccacagtttct |
234 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |
|
|
| T |
24969666 |
ggtgctgctgtaaatttgttgccacaatttct |
24969635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 24969839 - 24969769
Alignment:
| Q |
15 |
agggagatttcactgaagagatggcggttcacaaaccactgtgctcttatgttatggatagtggttgtgtc |
85 |
Q |
| |
|
|||||||||||||||| || ||| | ||||| ||||||||||||| ||| |||||||| | |||||||||| |
|
|
| T |
24969839 |
agggagatttcactgaggaaatgactgttcataaaccactgtgctattacgttatggacaatggttgtgtc |
24969769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 68 - 258
Target Start/End: Complemental strand, 22852082 - 22851892
Alignment:
| Q |
68 |
atggatagtggttgtgtcgaaggtgaacaggcaatgtttgagaaacttgatcatcacatgaaaagtcatcttaagcctttgtttatccaagctaaaatca |
167 |
Q |
| |
|
||||||| ||||||||| ||||| |||| || ||||| || | || ||||||| ||||| || ||||||||| |||||||| ||||| ||||| || | |
|
|
| T |
22852082 |
atggataatggttgtgtagaaggctaacaagctatgttcgaaagacatgatcatgacatgcaacatcatcttaaacctttgttcatccatgctaagatta |
22851983 |
T |
|
| Q |
168 |
ataatgttgggattaacaaagtgctcatcgatggtggtgctgctgtaaatttgttgccacagtttctcttaaaaaagattggtttgtcaga |
258 |
Q |
| |
|
| |||||||||| ||||| ||||| | || |||||||| || |||||| | ||||| || | ||||| ||||||||||| |||||||| |
|
|
| T |
22851982 |
aagatgttgggataaacaaggtgctggtagacggtggtgcagcggtaaatctattgccgcactgtctctgaaaaaagattgacttgtcaga |
22851892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 61 - 186
Target Start/End: Original strand, 23659978 - 23660103
Alignment:
| Q |
61 |
ttatgttatggatagtggttgtgtcgaaggtgaacaggcaatgtttgagaaacttgatcatcacatgaaaagtcatcttaagcctttgtttatccaagct |
160 |
Q |
| |
|
|||||| ||||||| ||||||||| ||||| | ||||| ||||| || | || |||| |||||||| || ||| || ||||||||||| ||||||||| |
|
|
| T |
23659978 |
ttatgtgatggataatggttgtgttgaaggccagcaggctatgttcgaaagacctgattatcacatgcaacatcacctcaagcctttgttcatccaagct |
23660077 |
T |
|
| Q |
161 |
aaaatcaataatgttgggattaacaa |
186 |
Q |
| |
|
||||| || ||||||| || ||||| |
|
|
| T |
23660078 |
aaaattgatgatgttggaataaacaa |
23660103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 61 - 186
Target Start/End: Complemental strand, 23798592 - 23798467
Alignment:
| Q |
61 |
ttatgttatggatagtggttgtgtcgaaggtgaacaggcaatgtttgagaaacttgatcatcacatgaaaagtcatcttaagcctttgtttatccaagct |
160 |
Q |
| |
|
|||||| ||||||| ||||||||| ||||| | ||||| ||||| || | || |||| |||||||| || ||| || ||||||||||| ||||||||| |
|
|
| T |
23798592 |
ttatgtgatggataatggttgtgttgaaggccagcaggctatgttcgaaagacctgattatcacatgcaacatcacctcaagcctttgttcatccaagct |
23798493 |
T |
|
| Q |
161 |
aaaatcaataatgttgggattaacaa |
186 |
Q |
| |
|
||||| || ||||||| || ||||| |
|
|
| T |
23798492 |
aaaattgatgatgttggaataaacaa |
23798467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0401 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0401
Description:
Target: scaffold0401; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 125 - 256
Target Start/End: Original strand, 2963 - 3094
Alignment:
| Q |
125 |
atgaaaagtcatcttaagcctttgtttatccaagctaaaatcaataatgttgggattaacaaagtgctcatcgatggtggtgctgctgtaaatttgttgc |
224 |
Q |
| |
|
||||| |||||||| || |||||||| | |||||||||||| || || ||||| | ||||||||||| | |||||||| ||||| || ||| | || | |
|
|
| T |
2963 |
atgaagagtcatctcaaacctttgttcacccaagctaaaattaacaacattggggtaaacaaagtgctacttgatggtggcgctgccgtgaatctattac |
3062 |
T |
|
| Q |
225 |
cacagtttctcttaaaaaagattggtttgtca |
256 |
Q |
| |
|
|||| | ||||||||||||||| |||||||| |
|
|
| T |
3063 |
cacaatccctcttaaaaaagattagtttgtca |
3094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 362
Target Start/End: Complemental strand, 25116009 - 25115714
Alignment:
| Q |
68 |
atggatagtggttgtgtcgaaggtgaacaggcaatgtttgagaaacttgatcatcacatgaaaagtcatcttaagcctttgtttatccaagctaaaatca |
167 |
Q |
| |
|
||||||| ||||||||| ||||| |||| || ||||| || | || ||||||||||||| || ||||||||| | |||||| || ||||| || | |
|
|
| T |
25116009 |
atggataatggttgtgtagaaggccaacaagctatgttcgaaagacctgatcatcacatgcaacatcatcttaaacatttgttcttctcggctaagatta |
25115910 |
T |
|
| Q |
168 |
ataatgttgggattaacaaagtgctcatcgatggtggtgctgctgtaaatttgttgccacagtttctcttaaaaaagattggtttgtcagagtccgacct |
267 |
Q |
| |
|
|| ||||||| || ||||| |||| | ||||| ||||| | |||||| | ||||| || | |||||||||||||||||| |||||||| | || | |
|
|
| T |
25115909 |
atgatgttggaataaacaaggtgcaggtagatggaggtgcaacggtaaatctattgccgcactgtctcttaaaaaagattggcttgtcagaaactgattt |
25115810 |
T |
|
| Q |
268 |
gaaaccacacattatcatactttccaactatgaaggaaagtctggaa-ttcctttggagctgtggaagtcgacttggtggtaggtactgtgaaaag |
362 |
Q |
| |
|
||| ||||||| | | | |||| |||||| ||||| || ||||||| |||| | || ||| | ||||| ||| |||||||||| ||||| ||||| |
|
|
| T |
25115809 |
gaagccacacaatgtagttctttgcaactacgaagggaaatctggaagttccctcggtgctattgaagttgacctggtggtaggaactgtcaaaag |
25115714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 165
Target Start/End: Complemental strand, 22507952 - 22507849
Alignment:
| Q |
62 |
tatgttatggatagtggttgtgtcgaaggtgaacaggcaatgtttgagaaacttgatcatcacatgaaaagtcatcttaagcctttgtttatccaagcta |
161 |
Q |
| |
|
||||||||| ||| | | ||||||||||| |||| || ||||| |||| || |||| |||| ||||| |||||||| || ||| ||||||||||||| | |
|
|
| T |
22507952 |
tatgttatgaataattgatgtgtcgaaggccaacatgctatgttcgagagacctgattatcatatgaatagtcatctcaaacctctgtttatccaagcca |
22507853 |
T |
|
| Q |
162 |
aaat |
165 |
Q |
| |
|
|||| |
|
|
| T |
22507852 |
aaat |
22507849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 163
Target Start/End: Original strand, 18454009 - 18454110
Alignment:
| Q |
62 |
tatgttatggatagtggttgtgtcgaaggtgaacaggcaatgtttgagaaacttgatcatcacatgaaaagtcatcttaagcctttgtttatccaagcta |
161 |
Q |
| |
|
||||||||| ||| ||||||||||||||| |||| || |||||||||| || |||| | || ||||| | |||||| || ||| |||||||| | |||| |
|
|
| T |
18454009 |
tatgttatgaataatggttgtgtcgaaggccaacatgctatgtttgagagacctgattaccatatgaagattcatctcaaacctctgtttatcaaggcta |
18454108 |
T |
|
| Q |
162 |
aa |
163 |
Q |
| |
|
|| |
|
|
| T |
18454109 |
aa |
18454110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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