View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16755_low_7 (Length: 414)
Name: NF16755_low_7
Description: NF16755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16755_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 1718831 - 1718555
Alignment:
| Q |
1 |
ctattacaacttgctttgcagtttatttaatttatgcgtccataatctcaatccaaatcatgcaattgcaatctgtcattttcgccttctttccctactt |
100 |
Q |
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| T |
1718831 |
ctattacaacttgctttgcagtttatttaatttatgcgtccataatctcaatccaaatcatgcaattgcaatctgtcattttcgccttctttccctactt |
1718732 |
T |
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| Q |
101 |
tcaatttaatgggagaggtaaaaaacaatcaaattattttatcatatgatctatgaatattagaagttagaaccttcccttaaaaaagaaactagaacc- |
199 |
Q |
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| T |
1718731 |
tcaatttaatgggagaggtaaaaaacaatcaaattattttatcatatgatctatgaatattagaagttagaaccttcccttaaaaaagaaactagaacct |
1718632 |
T |
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| Q |
200 |
nnnnnnnnaaggaagaaactagaaccttgttatgtcctatgttaccatnnnnnnntatttatggtgactcctcattg |
276 |
Q |
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| T |
1718631 |
ttttttttaaggaagaaactagaaccttgttatgtcctatgttaccataaaaaaatatttatggtgactcctcattg |
1718555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 342 - 403
Target Start/End: Complemental strand, 1718489 - 1718428
Alignment:
| Q |
342 |
gtttagttggctatagtggttaatcaccagttaattaatttgagttgccacttagtgttcat |
403 |
Q |
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| T |
1718489 |
gtttagttggctatagtggttaatcatcagttaattaatttgagttgccacttagtgttcat |
1718428 |
T |
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