View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16756_high_1 (Length: 507)

Name: NF16756_high_1
Description: NF16756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16756_high_1
NF16756_high_1
[»] chr3 (2 HSPs)
chr3 (16-497)||(48235636-48236117)
chr3 (213-428)||(50439335-50439550)
[»] chr1 (2 HSPs)
chr1 (16-493)||(3686383-3686860)
chr1 (213-427)||(1273956-1274170)
[»] chr2 (3 HSPs)
chr2 (354-425)||(45728271-45728342)
chr2 (177-298)||(42673868-42673989)
chr2 (381-422)||(42674072-42674113)
[»] chr8 (2 HSPs)
chr8 (191-298)||(6516733-6516840)
chr8 (378-418)||(6516920-6516960)
[»] scaffold0229 (1 HSPs)
scaffold0229 (305-427)||(56-178)


Alignment Details
Target: chr3 (Bit Score: 482; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 16 - 497
Target Start/End: Complemental strand, 48236117 - 48235636
Alignment:
Q  16 aggttgaggtactaagcagtattagacatccaaatatggtcctcctccttggagcatgtcctgagcattgttgtttggtgtatgagtacatggaaaacgg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48236117 aggttgaggtactaagcagtattagacatccaaatatggtcctcctccttggagcatgtcctgagcattgttgtttggtgtatgagtacatggaaaacgg 48236018  T
Q  116 taccttagaagatagattatttcggaaaaataactctaagcctctatcatggcaaaaaaggttcaaaatagcagctgagattgcaactgcacttcttttc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48236017 taccttagaagatagattatttcggaaaaataactctaagcctctatcatggcaaaaaaggttcaaaatagcagctgagattgcaactgcacttcttttc 48235918  T
Q  216 cttcaccaaacaaagccagagccaatcgtgcatcgagaccttaaaccatcaaacattttgttagacaaaaattacgtgagcaaagtcgctgatgtcggtc 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48235917 cttcaccaaacaaagccagagccaatcgtgcatcgagaccttaaaccatcaaacattttgttagacaaaaattacgtgagcaaagtcgctgatgtcggtc 48235818  T
Q  316 tcgcaagattagttcctccttctgtagctgacagcgtgacacaatattacatgacttcagctgctggaacattttgttatattgatcccgagtatcaaca 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48235817 tcgcaagattagttcctccttctgtagctgacagcgtgacacaatattacatgacttcagctgctggaacattttgttatattgatcccgagtatcaaca 48235718  T
Q  416 aacaggaatgttaacaccaaaatcagatatatattcattagggataatgctactgcagataatcacagccaggcctcctatg 497  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48235717 aacaggaatgttaacaccaaaatcagatatatattcattagggataatgctactgcagataatcacagccaggcctcctatg 48235636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 213 - 428
Target Start/End: Complemental strand, 50439550 - 50439335
Alignment:
Q  213 ttccttcaccaaacaaagccagagccaatcgtgcatcgagaccttaaaccatcaaacattttgttagacaaaaattacgtgagcaaagtcgctgatgtcg 312  Q
    ||||||||||||||||| ||||| || || || ||| ||||| | ||||||  |||||| ||| |||||| ||| || ||   |||| |   |||||| |    
T  50439550 ttccttcaccaaacaaaaccagaacctatagtacatagagacttgaaaccaggaaacatcttgctagacagaaactatgtagccaaaattagtgatgttg 50439451  T
Q  313 gtctcgcaagattagttcctccttctgtagctgacagcgtgacacaatattacatgacttcagctgctggaacattttgttatattgatcccgagtatca 412  Q
    || | |||||| | ||||| || ||||| || ||||| ||||| ||||||  ||||||  || | || |||||||| |||||||| ||||| ||||||||    
T  50439450 gtttggcaagacttgttccgccatctgtggccgacagtgtgacgcaatatcgcatgacggcaacagcaggaacattctgttatatagatcctgagtatca 50439351  T
Q  413 acaaacaggaatgtta 428  Q
     |||||||||||||||    
T  50439350 gcaaacaggaatgtta 50439335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 16 - 493
Target Start/End: Original strand, 3686383 - 3686860
Alignment:
Q  16 aggttgaggtactaagcagtattagacatccaaatatggtcctcctccttggagcatgtcctgagcattgttgtttggtgtatgagtacatggaaaacgg 115  Q
    ||||||||||| || |||  || |||||||| |||||||||||||||||||| |||||||  ||  || | |||||||| ||||| |||||||| || ||    
T  3686383 aggttgaggtattatgcaacataagacatcccaatatggtcctcctccttggtgcatgtcaagaatatggatgtttggtatatgaatacatggacaatgg 3686482  T
Q  116 taccttagaagatagattatttcggaaaaataactctaagcctctatcatggcaaaaaaggttcaaaatagcagctgagattgcaactgcacttcttttc 215  Q
    || ||||||||| ||||||||  | |||   ||| |    ||  |  |||||| |||| | ||| |||||||   ||| |||||||| ||||||||||||    
T  3686483 tagcttagaagacagattattaagaaaacgaaacacccctccaattccatggcgaaaacgtttcgaaatagcttatgaaattgcaacagcacttcttttc 3686582  T
Q  216 cttcaccaaacaaagccagagccaatcgtgcatcgagaccttaaaccatcaaacattttgttagacaaaaattacgtgagcaaagtcgctgatgtcggtc 315  Q
    |||||||||||||| |||||  |||| || ||| |||||||||||||| | |||||| | |||||||||||||  || |||||| |   |||||| |||     
T  3686583 cttcaccaaacaaaaccagaagcaattgttcatagagaccttaaaccagccaacattctcttagacaaaaattttgttagcaaaataagtgatgttggtt 3686682  T
Q  316 tcgcaagattagttcctccttctgtagctgacagcgtgacacaatattacatgacttcagctgctggaacattttgttatattgatcccgagtatcaaca 415  Q
    | ||||||||||| || ||||||||||||||    || ||||||||| ||||||||  ||| ||||||||||| ||||| |||||||| ||||||||| |    
T  3686683 tagcaagattagtaccaccttctgtagctgattctgtcacacaatatcacatgactgaagcagctggaacattatgttacattgatccagagtatcaaaa 3686782  T
Q  416 aacaggaatgttaacaccaaaatcagatatatattcattagggataatgctactgcagataatcacagccaggcctcc 493  Q
     |||||||  |||||| ||||||||||||| ||||| |||||||||||| | || || || |||||||| | ||||||    
T  3686783 tacaggaaaattaacaacaaaatcagatatttattctttagggataatgtttcttcaaattatcacagctaagcctcc 3686860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 427
Target Start/End: Original strand, 1273956 - 1274170
Alignment:
Q  213 ttccttcaccaaacaaagccagagccaatcgtgcatcgagaccttaaaccatcaaacattttgttagacaaaaattacgtgagcaaag-tcgctgatgtc 311  Q
    ||||| ||||||||||| || |||||| | || ||| |||||||||||||| ||||||| ||| | |||   || |||||  |||||| |   ||||||     
T  1273956 ttcctccaccaaacaaaacctgagccactagtacatagagaccttaaaccagcaaacatcttgcttgaccgcaactacgtc-gcaaagattagtgatgtt 1274054  T
Q  312 ggtctcgcaagattagttcctccttctgtagctgacagcgtgacacaatattacatgacttcagctgctggaacattttgttatattgatcccgagtatc 411  Q
    ||| | |||||| |||| || || || ||||| ||||  ||||||||||||   ||||| || ||||| |||||||| ||||| || ||||| ||||| |    
T  1274055 ggtttggcaagactagtaccgccatcagtagcagacaatgtgacacaatatcgaatgacatcggctgccggaacattctgttacatagatcctgagtacc 1274154  T
Q  412 aacaaacaggaatgtt 427  Q
    |||| |||||||||||    
T  1274155 aacagacaggaatgtt 1274170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 8e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 354 - 425
Target Start/End: Original strand, 45728271 - 45728342
Alignment:
Q  354 acacaatattacatgacttcagctgctggaacattttgttatattgatcccgagtatcaacaaacaggaatg 425  Q
    ||||||| || |||||| ||||| || |||||||| ||||||||||||||||||||||| ||||||||||||    
T  45728271 acacaatgttgcatgacatcagcagcgggaacattctgttatattgatcccgagtatcagcaaacaggaatg 45728342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 177 - 298
Target Start/End: Original strand, 42673868 - 42673989
Alignment:
Q  177 ttcaaaatagcagctgagattgcaactgcacttcttttccttcaccaaacaaagccagagccaatcgtgcatcgagaccttaaaccatcaaacattttgt 276  Q
    |||||||||||| | |||||||| || |  ||||||||||||||||| ||||| ||||| ||  | |||||||| || || |||||| |||||||| | |    
T  42673868 ttcaaaatagcatcagagattgcgacaggccttcttttccttcaccagacaaaaccagaaccggttgtgcatcgcgatctcaaaccagcaaacattctct 42673967  T
Q  277 tagacaaaaattacgtgagcaa 298  Q
    |||||| ||| ||||| |||||    
T  42673968 tagacagaaactacgtaagcaa 42673989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 381 - 422
Target Start/End: Original strand, 42674072 - 42674113
Alignment:
Q  381 ggaacattttgttatattgatcccgagtatcaacaaacagga 422  Q
    |||||||||| |||||||||||| ||||||||||||||||||    
T  42674072 ggaacatttttttatattgatccggagtatcaacaaacagga 42674113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 191 - 298
Target Start/End: Original strand, 6516733 - 6516840
Alignment:
Q  191 tgagattgcaactgcacttcttttccttcaccaaacaaagccagagccaatcgtgcatcgagaccttaaaccatcaaacattttgttagacaaaaattac 290  Q
    ||||||||| ||||  |||||||||||||||||| |||||||||| ||||| || ||||| ||  | ||||||  ||||||| | ||||||||||| |||    
T  6516733 tgagattgccactggccttcttttccttcaccaatcaaagccagatccaatagtacatcgtgatatgaaaccaggaaacattctcttagacaaaaactac 6516832  T
Q  291 gtgagcaa 298  Q
    || |||||    
T  6516833 gttagcaa 6516840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 418
Target Start/End: Original strand, 6516920 - 6516960
Alignment:
Q  378 gctggaacattttgttatattgatcccgagtatcaacaaac 418  Q
    |||||||||||||| || |||||||| ||||||||||||||    
T  6516920 gctggaacattttgctacattgatcctgagtatcaacaaac 6516960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 305 - 427
Target Start/End: Original strand, 56 - 178
Alignment:
Q  305 tgatgtcggtctcgcaagattagttcctccttctgtagctgacagcgtgacacaatattacatgacttcagctgctggaacattttgttatattgatccc 404  Q
    |||||| ||| | |||||| |||| || || || ||||| ||||  ||||||||||||   ||||| || ||||| |||||||| ||||| || |||||     
T  56 tgatgttggtttggcaagactagtaccgccatcagtagcagacaatgtgacacaatatcgaatgacatcggctgccggaacattctgttacatagatcct 155  T
Q  405 gagtatcaacaaacaggaatgtt 427  Q
    ||||| ||||| |||||||||||    
T  156 gagtaccaacagacaggaatgtt 178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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