View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16756_high_13 (Length: 313)
Name: NF16756_high_13
Description: NF16756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16756_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 2 - 297
Target Start/End: Complemental strand, 38538857 - 38538563
Alignment:
| Q |
2 |
aaaggataagacatgtagaggctccaagatcaaatggtggcattttaagagtgaaaacttatgataaccataaacgcaatgttttaaagaacatttgata |
101 |
Q |
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| T |
38538857 |
aaaggataagataagtagaggctccaagatcaagtggtggcattttaagagtgaaaacttatgataaccataaacgcaatgttttaaagaacatttgata |
38538758 |
T |
|
| Q |
102 |
caacaaaatatatctcgaaaaattccaacttttaccaagattgatatagtgacaacttacaccaatatgtcaccattatatttcttataattaattggcc |
201 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38538757 |
caacaaagtatatctcgaaaaattccaacttttaccaagattgatatagtgacaacttacaccaatatgtcaccattatatttcttataattaattggcc |
38538658 |
T |
|
| Q |
202 |
tgtccacacttttaatcatatcacccttaaagaccttatatttgggaggttgatggacttgcataaatacctatcagacttctcacacctacatac |
297 |
Q |
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|||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||| |||||||| ||||||||| ||||||||||| |
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| T |
38538657 |
tgtccacacttttaatcatatcacccttaaaggcc-tatatttggggggttgatggacttgcatacatacctatgagacttctctcacctacatac |
38538563 |
T |
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