View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16756_high_14 (Length: 305)
Name: NF16756_high_14
Description: NF16756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16756_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 8 - 288
Target Start/End: Complemental strand, 21398120 - 21397840
Alignment:
| Q |
8 |
aacctgtgtaattttgaactcaattagtaaaataagtattagaaagacaaaagtatatagaattaataatgaatgtttgttaagacggtgagagagggac |
107 |
Q |
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| T |
21398120 |
aacctgtataattttgaactcaattagtaaaataagtattagaaagacaaaagtatatagaattaataatgaatgtttgttaagacggtgagagagggac |
21398021 |
T |
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| Q |
108 |
aatctcagtttacctcattgtggtgggtgaagtagttattggaaacggtaatggcagtggatcccatgatagcatcaacaagaccatcagcgcaattaga |
207 |
Q |
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| T |
21398020 |
aatctcagtttacctcattgtggtgggtgaagtagttattggaaacggtaatggcggtggatcccataatagcatcaacaagaccatcagcgcaattaga |
21397921 |
T |
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| Q |
208 |
cagagagttgtggtcaatccaaatatgactggaaccaaagatggaaatgccatcaccatcagccattgtcctccatccaaa |
288 |
Q |
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| T |
21397920 |
cagagagttgtggtcaatccaaatatgactggaaccaaagatggaaatgccatcaccatcagccattgtcctccatccaaa |
21397840 |
T |
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Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 118 - 288
Target Start/End: Complemental strand, 17910170 - 17910000
Alignment:
| Q |
118 |
tacctcattgtggtgggtgaagtagttattggaaacggtaatggcagtggatcccatgatagcatcaacaagaccatcagcgcaattagacagagagttg |
217 |
Q |
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||||||||||||||||||||||| ||| || || | || || || || || ||||||| ||||||||||||||||||||| |||| ||| ||||| || |
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| T |
17910170 |
tacctcattgtggtgggtgaagtggttgttagagattgttatagctgttgagcccatgacagcatcaacaagaccatcagcacaatgagaaagagaatta |
17910071 |
T |
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| Q |
218 |
tggtcaatccaaatatgactggaaccaaagatggaaatgccatcaccatcagccattgtcctccatccaaa |
288 |
Q |
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| T |
17910070 |
tgatcaacccaaatatgacttgaaccaaatatagaaacagcatcaccatcagccatagtcctccaaccaaa |
17910000 |
T |
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