View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16756_high_16 (Length: 291)
Name: NF16756_high_16
Description: NF16756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16756_high_16 |
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Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 3 - 279
Target Start/End: Original strand, 23289381 - 23289657
Alignment:
| Q |
3 |
aaacatgtgatgatagagaaaaaacaatttaaaactcaatccgtataaacatacggtacttgtgtcctaaactgtgtaaacaaaacatttctctacctaa |
102 |
Q |
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| T |
23289381 |
aaacatttgatgatagagaaaaaacaatttaaaactcaatccgtataaacatacggtacttgtgtcctaaactgtgtcaacaaaacatttctctacctaa |
23289480 |
T |
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| Q |
103 |
aatccataccactaacaaaaattgtagtacaaacattttccattttacaatccaaacnnnnnnnngtaaaccaaacacttcaagttcagaagttccatag |
202 |
Q |
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| T |
23289481 |
aatccataccactaacaaaaattgtagtacagacattttccgttttacaatccaaacaaaaaaaagtaaaccaaacacttcaagttcagaagttccatag |
23289580 |
T |
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| Q |
203 |
cgatacctcttcatcttgaaattgtacatcaaaatcttcatactcatgctccaaactatgtgtaggggacattagtg |
279 |
Q |
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| T |
23289581 |
cgatacctcttcatcttgaaattgtacatcaaaatcttcatactcatgctcaaaactatgtgtaggggacattagtg |
23289657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 3 - 276
Target Start/End: Original strand, 23283037 - 23283314
Alignment:
| Q |
3 |
aaacatgtgatgatagagaaaaaacaatttaaaactcaa--tccgtataaacatacggtacttgtgtcctaaactgtgtaaacaaaacatttctctacct |
100 |
Q |
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| T |
23283037 |
aaacatttgaagatagagaaaaaacaatttaaaacacaaaatccgtataaatatacggtacctgtgtcctaaactgtgcaaacaaaacatttccctacat |
23283136 |
T |
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| Q |
101 |
aaaatccataccactaacaaaaattgtagtacaaacattttccattttacaatccaaacnnnnnnnngtaaaccaaacacttcaagttcagaagttccat |
200 |
Q |
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| T |
23283137 |
aaaatccataccactaacaaaaattgtagtatagacattttcaattctacaatccaaa-aaaaaaaacaaaaccaaactcttcaattttagaagttccat |
23283235 |
T |
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| Q |
201 |
agcgatacctcttcatcttgaaa---ttgtacatcaaaatcttcatactcatgctccaaactatgtgtaggggacatta |
276 |
Q |
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| T |
23283236 |
agggatacctcttcatcttgaaagtcttgtaaatcaaaattttcatactcatgctccatactatgtgtaggggacatta |
23283314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 169 - 279
Target Start/End: Original strand, 23257567 - 23257686
Alignment:
| Q |
169 |
taaaccaaacacttcaagttcagaagttccatagcgatacctcttcatcttgaaa---ttgtacatcaaaatcttcatac---tcatg---ctccaaact |
259 |
Q |
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| T |
23257567 |
taaaccaaacacattaagtttagaagttccatagtgatacctcatcatcttgaaagtcttgtacatgaatatcttcatactgatcatgatactcaaagct |
23257666 |
T |
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| Q |
260 |
atgtgtaggggacattagtg |
279 |
Q |
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| T |
23257667 |
atgtgtaggggacattagtg |
23257686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 274
Target Start/End: Original strand, 23247205 - 23247293
Alignment:
| Q |
192 |
aagttccatagcgatacctcttcatcttgaaa---ttgtacatcaaaatcttcatactcatg---ctccaaactatgtgtaggggacat |
274 |
Q |
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||||||||||| |||||||| ||||||||||| |||||||| || ||| ||||||||||| ||| || ||||||||||| ||||| |
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| T |
23247205 |
aagttccatagtgatacctcatcatcttgaaaatcttgtacatgaatatcgtcatactcatgatactcaaagctatgtgtaggtgacat |
23247293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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