View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16756_high_17 (Length: 290)

Name: NF16756_high_17
Description: NF16756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16756_high_17
NF16756_high_17
[»] chr6 (10 HSPs)
chr6 (16-275)||(18997144-18997403)
chr6 (22-139)||(20238397-20238514)
chr6 (22-139)||(22132381-22132498)
chr6 (16-96)||(20086527-20086607)
chr6 (141-275)||(22205407-22205547)
chr6 (146-178)||(20237632-20237664)
chr6 (146-178)||(22131616-22131648)
chr6 (22-56)||(24384769-24384803)
chr6 (146-178)||(20085719-20085751)
chr6 (146-178)||(24385624-24385656)
[»] scaffold0007 (2 HSPs)
scaffold0007 (16-154)||(4888-5026)
scaffold0007 (146-178)||(5765-5797)
[»] scaffold0264 (2 HSPs)
scaffold0264 (16-96)||(16476-16556)
scaffold0264 (141-275)||(15566-15706)
[»] scaffold0074 (2 HSPs)
scaffold0074 (17-81)||(47386-47450)
scaffold0074 (146-178)||(48238-48270)


Alignment Details
Target: chr6 (Bit Score: 252; Significance: 1e-140; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 16 - 275
Target Start/End: Complemental strand, 18997403 - 18997144
Alignment:
Q  16 ctgtgttgaatgcatagttcatgcaactcaaaaactgtccttagattgccctttatccaaacaagcagtcatttattacgacgagtgtaatgttcgttac 115  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18997403 ctgtgttgaatgcatagttcatgcaactaaaaaactgtccttagattgccctttatccaaacaagcagtcatttattacgacgagtgtaatgttcgttac 18997304  T
Q  116 tcctacaactatttcttttccaccgttgatacaagtcctatgtatagagatataaatatcacctatacagaccaaaacttgtacattatgacattattga 215  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18997303 tcctacaactatttcttttccactgttgatacaagtcctatgtatagagatataaatatcacctatacagaccaaaacttgtacattatgacattattga 18997204  T
Q  216 atcagttttccaaacttgcatatgaaacggggtacagtgttgaaagatatatgactaatt 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18997203 atcagttttccaaacttgcatatgaaacggggtacagtgttgaaagatatatgactaatt 18997144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 22 - 139
Target Start/End: Complemental strand, 20238514 - 20238397
Alignment:
Q  22 tgaatgcatagttcatgcaactcaaaaactgtccttagattgccctttatccaaacaagcagtcatttattacgacgagtgtaatgttcgttactcctac 121  Q
    ||||||| ||||| |||| ||||||||| |||||||||| ||||||||||| |||||||| || |||||||||||||| |||  ||||||||||||  |     
T  20238514 tgaatgcgtagttaatgctactcaaaaattgtccttagactgccctttatcaaaacaagccgtgatttattacgacgattgtcttgttcgttactcagat 20238415  T
Q  122 aactatttcttttccacc 139  Q
    ||||||||||||||||||    
T  20238414 aactatttcttttccacc 20238397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 22 - 139
Target Start/End: Complemental strand, 22132498 - 22132381
Alignment:
Q  22 tgaatgcatagttcatgcaactcaaaaactgtccttagattgccctttatccaaacaagcagtcatttattacgacgagtgtaatgttcgttactcctac 121  Q
    ||||||| ||||| |||| ||||||||| |||||||||| ||||||||||| |||||||| || |||||||||||||| |||  ||||||||||||  |     
T  22132498 tgaatgcgtagttaatgctactcaaaaattgtccttagactgccctttatcaaaacaagccgtgatttattacgacgattgtcttgttcgttactcagat 22132399  T
Q  122 aactatttcttttccacc 139  Q
    ||||||||||||||||||    
T  22132398 aactatttcttttccacc 22132381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 20086607 - 20086527
Alignment:
Q  16 ctgtgttgaatgcatagttcatgcaactcaaaaactgtccttagattgccctttatccaaacaagcagtcatttattacga 96  Q
    ||||| ||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||| || |||||||||||    
T  20086607 ctgtgatgaatgcatagttaatgcaactcaaaaactttccttagattgcccattatccaaacaagctgtaatttattacga 20086527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 275
Target Start/End: Original strand, 22205407 - 22205547
Alignment:
Q  141 ttgatacaagtcctatgtatagagatataaatatcacctat------acagaccaaaacttgtacattatgacattattgaatcagttttccaaacttgc 234  Q
    |||| ||||||||||||||||||||||||||||||||  ||      ||| ||||||||| || || ||  || |||| ||||||||| ||  |||||||    
T  22205407 ttgaaacaagtcctatgtatagagatataaatatcactgattacaccacaaaccaaaactggttcactagtaccttatcgaatcagttatctcaacttgc 22205506  T
Q  235 atatgaaacggggtacagtgttgaaagatatatgactaatt 275  Q
      |||| || ||| |||||| ||||||||||| ||||||||    
T  22205507 gaatgatacaggggacagtgatgaaagatataagactaatt 22205547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 178
Target Start/End: Complemental strand, 20237664 - 20237632
Alignment:
Q  146 acaagtcctatgtatagagatataaatatcacc 178  Q
    |||||||||||||||||||||||||||||||||    
T  20237664 acaagtcctatgtatagagatataaatatcacc 20237632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 178
Target Start/End: Complemental strand, 22131648 - 22131616
Alignment:
Q  146 acaagtcctatgtatagagatataaatatcacc 178  Q
    |||||||||||||||||||||||||||||||||    
T  22131648 acaagtcctatgtatagagatataaatatcacc 22131616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 56
Target Start/End: Original strand, 24384769 - 24384803
Alignment:
Q  22 tgaatgcatagttcatgcaactcaaaaactgtcct 56  Q
    ||||||||||||| |||||||||||||||||||||    
T  24384769 tgaatgcatagttaatgcaactcaaaaactgtcct 24384803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 178
Target Start/End: Complemental strand, 20085751 - 20085719
Alignment:
Q  146 acaagtcctatgtatagagatataaatatcacc 178  Q
    ||||||||||||||||| |||||||||||||||    
T  20085751 acaagtcctatgtatagcgatataaatatcacc 20085719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 178
Target Start/End: Original strand, 24385624 - 24385656
Alignment:
Q  146 acaagtcctatgtatagagatataaatatcacc 178  Q
    ||||||||||||||||| |||||||||||||||    
T  24385624 acaagtcctatgtatagcgatataaatatcacc 24385656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 154
Target Start/End: Original strand, 4888 - 5026
Alignment:
Q  16 ctgtgttgaatgcatagttcatgcaactcaaaaactgtccttagattgccctttatccaaacaagcagtcatttattacgacgagtgtaatgttcgttac 115  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||  | || |  ||||| |||    
T  4888 ctgtgatgaatgcatagttaatgcaactcaaaaactgtccttagattgcccattatccaaacaagctgtaatttattacgaaaattgcatggttcgatac 4987  T
Q  116 tcctacaactatttcttttccaccgttgatacaagtcct 154  Q
    ||| |  | | |||||||||||| |||||||||| ||||    
T  4988 tccaatgagtctttcttttccactgttgatacaaatcct 5026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 178
Target Start/End: Original strand, 5765 - 5797
Alignment:
Q  146 acaagtcctatgtatagagatataaatatcacc 178  Q
    |||||||||||||||||||||||||||||||||    
T  5765 acaagtcctatgtatagagatataaatatcacc 5797  T

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Target: scaffold0264 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 16556 - 16476
Alignment:
Q  16 ctgtgttgaatgcatagttcatgcaactcaaaaactgtccttagattgccctttatccaaacaagcagtcatttattacga 96  Q
    ||||| ||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||| || |||||||||||    
T  16556 ctgtgatgaatgcatagttaatgcaactcaaaaactttccttagattgcccattatccaaacaagctgtaatttattacga 16476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 275
Target Start/End: Complemental strand, 15706 - 15566
Alignment:
Q  141 ttgatacaagtcctatgtatagagatataaatatcacctat------acagaccaaaacttgtacattatgacattattgaatcagttttccaaacttgc 234  Q
    |||| ||||||||||||||||||||||||||||||||  ||      ||| ||||||||| || || ||  || |||| ||||||||| ||  |||||||    
T  15706 ttgaaacaagtcctatgtatagagatataaatatcactgattacaccacaaaccaaaactggttcactagtaccttatcgaatcagttatctcaacttgc 15607  T
Q  235 atatgaaacggggtacagtgttgaaagatatatgactaatt 275  Q
      |||| || ||| |||||| ||||||||||| ||||||||    
T  15606 gaatgatacaggggacagtgatgaaagatataagactaatt 15566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 47386 - 47450
Alignment:
Q  17 tgtgttgaatgcatagttcatgcaactcaaaaactgtccttagattgccctttatccaaacaagc 81  Q
    |||| ||||||||||||| |||||| |||||||| ||||||||||||||| ||||||||| ||||    
T  47386 tgtgatgaatgcatagttaatgcaattcaaaaaccgtccttagattgcccattatccaaagaagc 47450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 178
Target Start/End: Original strand, 48238 - 48270
Alignment:
Q  146 acaagtcctatgtatagagatataaatatcacc 178  Q
    |||||||||||||||||||||||||||||||||    
T  48238 acaagtcctatgtatagagatataaatatcacc 48270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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