View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16756_high_21 (Length: 255)
Name: NF16756_high_21
Description: NF16756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16756_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 96 - 244
Target Start/End: Complemental strand, 31703192 - 31703045
Alignment:
| Q |
96 |
ataattcagtctcagatacgcccctgaatataacgcgtgttaaccaacatggatattgaatataagagtcgaaatatagctgctaatatgcaaatttgac |
195 |
Q |
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| T |
31703192 |
ataattcaatctcagatacgccc-taaatataacgcgtgttaaccaacatgaatattgaatgtaggagtcgacatatagctgctaatatgcaaatttgac |
31703094 |
T |
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| Q |
196 |
acgaagtatgccaacgtttttccttaggatgtggctaattacaacctat |
244 |
Q |
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| T |
31703093 |
acgaagtatgccaacgtttttccttaggatgtggctgattactacctat |
31703045 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 50661228 - 50661170
Alignment:
| Q |
17 |
aatacatatattgatatttttgtaatctattttgccaaaa-atttaatcttacttcctt |
74 |
Q |
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| T |
50661228 |
aatacatatgttgctatttttgtaatttattttgccaaaatttttagtcttacttcctt |
50661170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 50677850 - 50677792
Alignment:
| Q |
17 |
aatacatatattgatatttttgtaatctattttgccaaaa-atttaatcttacttcctt |
74 |
Q |
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| T |
50677850 |
aatacatatgtttatatttttgtaatttattttgccaaaatttttagtcttacttcctt |
50677792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 12729717 - 12729661
Alignment:
| Q |
19 |
tacatatattgatatttttgtaatctattttg-ccaaaaatttaatcttacttcctt |
74 |
Q |
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| T |
12729717 |
tacatatgttgttatttttgtaatctattttgcccaaacttttagtcttacttcctt |
12729661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 12792607 - 12792551
Alignment:
| Q |
19 |
tacatatattgatatttttgtaatctattttg-ccaaaaatttaatcttacttcctt |
74 |
Q |
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||||||| ||| |||||||||||||||||||| ||||| |||| |||||||||||| |
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| T |
12792607 |
tacatatgttgttatttttgtaatctattttgcccaaacttttagtcttacttcctt |
12792551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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