View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16756_high_28 (Length: 214)
Name: NF16756_high_28
Description: NF16756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16756_high_28 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 17 - 187
Target Start/End: Original strand, 43131275 - 43131445
Alignment:
| Q |
17 |
caaaggcgactcaagcatcagcagaagtggcaaaccatataaattcacatttcaagctgttgatggagaggaacaaacactatgtccaagaaccacctac |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
43131275 |
caaaggcgactcaagcatcagcagaagtggcaaaccatataaattcacatttcaagctgttgatggagaggaacaaacaccatgtccaagaaccacctac |
43131374 |
T |
|
| Q |
117 |
tattgaaaagtgccaatcactagccaaacaattgttctatactcgacttgccaggtttgttgcatatatat |
187 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43131375 |
tattgaaaagtgtcaatcactggccaaacaattgttctatactcgacttgccaggtttgttgcatatatat |
43131445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University