View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16756_low_10 (Length: 354)
Name: NF16756_low_10
Description: NF16756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16756_low_10 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 11 - 327
Target Start/End: Original strand, 43131129 - 43131445
Alignment:
| Q |
11 |
caaaggtgactcatacagcaaggtttgtgtgtggaaatttaaaagaaaaacagaatgatgagatttgaataaatttttgaaccttatatatcttaatata |
110 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
43131129 |
caaaggtgactcatacaacaaggtttgtgtgtggaaatttaaaagaaaaacagaatgatgagatttgaataaatttttgacccatatatatcttaatata |
43131228 |
T |
|
| Q |
111 |
attttgtatagtaaatccatgacatcaaagattcctgagctgcaatcaaaggcgactcaagcatcagcagaagtggcaaaccatataaattcacatttca |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43131229 |
attttgtatagtaaatccatgacatcaaagattcctgagctgcaatcaaaggcgactcaagcatcagcagaagtggcaaaccatataaattcacatttca |
43131328 |
T |
|
| Q |
211 |
agctgttgatggagaggaacaaacactatgtccaagaaccacctactattgaaaagtgccaatcactagccaaacaattgttctatactcgacttgccag |
310 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
43131329 |
agctgttgatggagaggaacaaacaccatgtccaagaaccacctactattgaaaagtgtcaatcactggccaaacaattgttctatactcgacttgccag |
43131428 |
T |
|
| Q |
311 |
gtttgttgcatatatat |
327 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
43131429 |
gtttgttgcatatatat |
43131445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 173
Target Start/End: Original strand, 43130447 - 43130508
Alignment:
| Q |
112 |
ttttgtatagtaaatccatgacatcaaagattcctgagctgcaatcaaaggcgactcaagca |
173 |
Q |
| |
|
||||||||||| || ||||| |||||||||||| ||||||||| ||||| |||||||||| |
|
|
| T |
43130447 |
ttttgtatagtgaactaatgacttcaaagattcctcagctgcaattaaaggtgactcaagca |
43130508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University